PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.4306_g
Common NameCOCSUDRAFT_63523
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 716aa    MW: 73416 Da    PI: 8.1961
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.4306_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.7e-09588645461
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       ++  rr+ +NRe+Arr RqR+  e++ L+   ++L+a  ++L+ ++  l     +l s
  Genemark1.4306_g 588 DRIKRRRLSNRESARRTRQRRNSEMAALRGTNEALQADAEKLRAQVADLAAANHALLS 645
                       56689**************************************999999887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-9583643No hitNo description
SMARTSM003381.1E-6585649IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.772587636IPR004827Basic-leucine zipper domain
PfamPF001702.1E-7589645IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-7589644No hitNo description
CDDcd147022.42E-8591637No hitNo description
PROSITE patternPS000360592607IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MSEQEAAPAS PAEDSEATAS DSSRHAADEK HDGSPVSTAT DDARQGRSRR GLRARPEQAL  60
PVSRHGAHEI SARTGPPGRA AAAANVVNTP GVATPSLSAP LLGPAQATPS TASGQLAPGE  120
AALHHVLSGH SAATFLDASG SPRWQGSSGS ATLSGRNSLL SSLDSLLAAR QASAPVGGAR  180
RQPATGAERM LAGLLGALRH QQRTAEGGPG PPAAAAAAAP LGAVAQQVSD ANTIQAFLNS  240
VGFKLRTPDQ GDSTNAPPPS TQLPRQPSSL PKGKEAVAES AEAPAPQGSR GLQRTNSLPI  300
PDPGTPPPHH PQESATVAFQ LGQPITNPFA GFANDLLQRQ ASSLASHPPL HWSTAALAAA  360
AQPPSAAGAA QQARPPTSSF VFLQPPKSLP VNSDTASRRS GDAQRAPSGG RGISSKRKAG  420
GEAPAEQSAE SLPRPNLTHA LGDALDWSAS SKPGLPQQWS ALQAAASAPT VAAAGQDLQR  480
HAGDFLRQMQ ESMPAAMRIS QSLPPRSLLT ADSYRALERS LDAAGQGSGR AIAEEVQRLL  540
GRARAQASAA GAPREAAAAA ARADESDAGA DDSEAPREGE PAADTLEDRI KRRRLSNRES  600
ARRTRQRRNS EMAALRGTNE ALQADAEKLR AQVADLAAAN HALLSSIPGL GDPKLQELAA  660
ENAALKLELL ELRAAVTQHL AAHASQLPYA QSIALSQVIE QARRQANAEE NEEGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1590594KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005647704.10.0hypothetical protein COCSUDRAFT_63523
TrEMBLI0YXP10.0I0YXP1_COCSC; Uncharacterized protein
STRINGXP_005647704.10.0(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]