PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.3949_g

Common Name

COCSUDRAFT_63166

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

NF-YB

Protein Properties

Length: 872aa MW: 91508 Da PI: 5.1968

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.3949_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	40.1	9.1e-13	46	118	25	97
NF-YB 25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +i kda e + f+s++ts a+d c++ kr+ti+++d++ al +l f + v p k l+ +r+ +ek Genemark1.3949_g 46 IQINKDALLAFSESAKVFVSYLTSAANDICKEAKRQTISAEDVFTALQDLDFGELVPPTKDALEAFRQESKEK 118 479999999**********************************************************987775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-32	10	134	IPR009072	Histone-fold
SuperFamily	SSF47113	3.62E-23	14	126	IPR009072	Histone-fold
Pfam	PF00808	1.8E-8	47	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:2.130.10.10	2.0E-16	384	586	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	3.36E-19	386	582	IPR017986	WD40-repeat-containing domain
SMART	SM00320	0.021	499	537	IPR001680	WD40 repeat
PROSITE profile	PS50294	8.94	505	592	IPR017986	WD40-repeat-containing domain
SMART	SM00320	2.3	544	583	IPR001680	WD40 repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MTTAALKTVA EEKDTDLPRG LVKKIVKNKV NQTLASSGSG EPLKDIQINK DALLAFSESA 60 KVFVSYLTSA ANDICKEAKR QTISAEDVFT ALQDLDFGEL VPPTKDALEA FRQESKEKTK 120 RKAEQVKKRK AEEAVRHHPY EGADQVVGEG PQEGLPADSG NPAEPVEPYA QQPQAQAPYI 180 AKAHPAFSEP QKLPQPTATQ YQQAAALPVQ QQQGGSYQPA FNQANPFGPA FAQASQFAAA 240 LAQAQAAQAA QAQAQAHAQA QASQLLPSHF PAAQLQNPTF AQLASSQARC ACLCFTVPGH 300 LNQANYAQFA AVIAQQAARQ RQAQEAQLAQ QQGNPQAHFF QQAPAQQLFQ QTQVQQPQPQ 360 QPHQEAATEA TQPLTETAPT AESGLHNCIS WRPGSSWVAL QCDTAKLVVL DIGNPDKRAS 420 EVQRLCWKKV LEIIACAWSE NGEYLLTAHA ATNGALFMYK DVCISMAYGD PAHLRIAVAG 480 SPGVILYSAS ISKESGRWEA RQEGRLCHLW PVCAVRFGPG GRHLAAAGLG GQLCIWDMSS 540 ADGSATLELQ VQVPAERVTS MAFSPNGSAL AVACWGGALF LYLQQDSPLD ASLPTAFHAA 600 AQQEPGEGAS AGGIRHDASR EAQEGTAALT GAAPGLRVGV GGAPAGGFTQ DGIVEGQKGA 660 DALEVAGGKD EGAGGAPAGE ITYDGTAEGQ EGADELEEAG GKEVGAEGIA AAYESRLAAI 720 DHGADGRGGW RPAPASLPGQ PVKPDATGPT LLEWLGDDSI LLTHPSTALV LVKVEKGGLV 780 PMRFRQTAGK EQHSSPKASG SADASQLEAS GRASDASSDE ETGLEEQSNA LKGLAVMHVA 840 GQHVVVCYDR TRSLHVFSQN VNRLAGVPET V*

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MTTAALKTVA EEKDTDLPRG LVKKIVKNKV NQTLASSGSG EPLKDIQINK DALLAFSESA  60
KVFVSYLTSA ANDICKEAKR QTISAEDVFT ALQDLDFGEL VPPTKDALEA FRQESKEKTK  120
RKAEQVKKRK AEEAVRHHPY EGADQVVGEG PQEGLPADSG NPAEPVEPYA QQPQAQAPYI  180
AKAHPAFSEP QKLPQPTATQ YQQAAALPVQ QQQGGSYQPA FNQANPFGPA FAQASQFAAA  240
LAQAQAAQAA QAQAQAHAQA QASQLLPSHF PAAQLQNPTF AQLASSQARC ACLCFTVPGH  300
LNQANYAQFA AVIAQQAARQ RQAQEAQLAQ QQGNPQAHFF QQAPAQQLFQ QTQVQQPQPQ  360
QPHQEAATEA TQPLTETAPT AESGLHNCIS WRPGSSWVAL QCDTAKLVVL DIGNPDKRAS  420
EVQRLCWKKV LEIIACAWSE NGEYLLTAHA ATNGALFMYK DVCISMAYGD PAHLRIAVAG  480
SPGVILYSAS ISKESGRWEA RQEGRLCHLW PVCAVRFGPG GRHLAAAGLG GQLCIWDMSS  540
ADGSATLELQ VQVPAERVTS MAFSPNGSAL AVACWGGALF LYLQQDSPLD ASLPTAFHAA  600
AQQEPGEGAS AGGIRHDASR EAQEGTAALT GAAPGLRVGV GGAPAGGFTQ DGIVEGQKGA  660
DALEVAGGKD EGAGGAPAGE ITYDGTAEGQ EGADELEEAG GKEVGAEGIA AAYESRLAAI  720
DHGADGRGGW RPAPASLPGQ PVKPDATGPT LLEWLGDDSI LLTHPSTALV LVKVEKGGLV  780
PMRFRQTAGK EQHSSPKASG SADASQLEAS GRASDASSDE ETGLEEQSNA LKGLAVMHVA  840
GQHVVVCYDR TRSLHVFSQN VNRLAGVPET V*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648182.1	0.0	hypothetical protein COCSUDRAFT_63166
TrEMBL	I0YZ19	0.0	I0YZ19_COCSC; Uncharacterized protein
STRING	XP_005648182.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3453	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-23	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	17041630

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]