PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.2930_g
Common NameCOCSUDRAFT_62147
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ERF
Protein Properties Length: 355aa    MW: 38026.1 Da    PI: 5.6196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.2930_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.7e-08249296248
               AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng...krkrfslgkfgtaeeAakaaia 48 
                       +y+G  ++ +++rW+A +   s  +g   + + +++g+fg++ eAa a+++
  Genemark1.2930_g 249 RYTGTNYHTRNKRWRALL---SFsRGsatVARPHHIGYFGSELEAAVAYDQ 296
                       799999***********4...4446776666**********99******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-5249313IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDIQAYSGRD NSVSQRLARS GSLDRELEGV GSGSGLLNNH APPYDAASPT VYDPAVAVTG  60
DDQNGGNIAR SLSYPELAIP GATHARLHLP QAASDSGAGP SSRAHDSPPP MAILPADDGL  120
EALVAHYLPA ALESHLPQQL SGSPPSDETA RDAVATGDSD PMDVDEVPAA PEMPAKLRQL  180
DPAFFRLGPD KICGKPLKEE DAEASKGTPL KKKARRSEDQ HATAADQPDI KDFAGKPAEQ  240
LSGEEKPKRY TGTNYHTRNK RWRALLSFSR GSATVARPHH IGYFGSELEA AVAYDQVVII  300
TQSLQRKTNF DRSFYVSKEE LREWWGDMTD VLGPPDEWAA KKAAPGTKRT CNSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649274.10.0hypothetical protein COCSUDRAFT_62147
TrEMBLI0Z2610.0I0Z261_COCSC; Uncharacterized protein
STRINGXP_005649274.10.0(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]