PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2708_g

Common Name

COCSUDRAFT_61925

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

SBP

Protein Properties

Length: 1381aa MW: 141268 Da PI: 8.6158

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2708_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	83.5	2.8e-26	149	223	4	78
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 ve+C+ d+ e+ +yh r+++C+vh + p+ + +g+ qrfCqqC+r helsef+ ++rsCr +L++hn+rrr++++ Genemark1.2708_g 149 VEDCTRDVCELSTYHFRYRICNVHIRLPAFMRQGKLQRFCQQCGRCHELSEFEGSQRSCRAQLDRHNARRRQAKK 223 99*********************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	22.401	144	221	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.0E-19	148	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-22	149	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-23	149	220	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51007	7.282	177	317	IPR009056	Cytochrome c-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0009055	Molecular Function	electron carrier activity
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 1381 aa Download sequence Send to blast
MPAAAAAAMK FTSDGDTAAG VAKPRWRPCV RAVGVLCRGW WRTAVPGTEQ SDALSVLGSA 60 RAKEVRPYRH QAPRLKRTAP RPCSVPEAPF EQVKPFGMRL DLLHRSSSGL SSDRGQAVPQ 120 LLTLQRSLAL PLLLNAPNGL QRQDRGPAVE DCTRDVCELS TYHFRYRICN VHIRLPAFMR 180 QGKLQRFCQQ CGRCHELSEF EGSQRSCRAQ LDRHNARRRQ AKKNAAAAKG PGAGSAAHAA 240 GASASGQYSS STSLPASSSG GGGAVPRGGR SGAGEAGLLG PRRSRDPALS AAAAGLFSGA 300 DDEDAAADAA TLLSVSQPRP ALLPQPEQQP SASRLGSSRL SAFAQYSGEP AVGDAATAAR 360 TGSGAMRAVT PTDASERRLG SQMLRQGSEK SRQQQITSSS ESAAAGVYDT SPGRADAEEA 420 TSQARRQSHS VGEEAASLEP AVRRRSGNLP AHGNERVGSA PGPSGKTSPS PGAASRFLDS 480 AAAQGFAAVL SRAAAAALQE AAAEQPPKMH DIVPGVAAGV QMGPIEPQPT PFSALASASL 540 SEAPTTQLSI SPRAPEAMSA TFPPSVSPAA ATAAVDLKSG IQASRSLSES MLPGESPPSW 600 AGTAKRTASV ARPLDRSGLM SATGAPSVSN SAAGSAELLA ARSRLALERN AMVLRGLQQS 660 MAADGSGRKV SSSASIALTQ RGNSTQSSMD LYVPDAAAAA AASASGADAA AARLPSADKS 720 PNRPPPFPQP PRGGQPGRAA QGEASPQQQE PYEDAVRHWL HFGQQIAAST KPGPQGLLPH 780 SLGLQAVNYL AGEVGAAAAS AEAGVQELPL PVQLAGKEDR QVLAGSLPEG LRTALGLSMG 840 QPVGQPQRKG THIDAPALAA AGEGPGAAVA PPSLLSQAEA AAAAAAQPSQ TVQAQLAASA 900 AAAAAQQSLY LPMARSTAQI GMAGADQAGA AAAAVAGAAQ LQAANPLSYQ FYQMLLGSMA 960 SAAPKQQLQQ QQAAFLENVA AANAAALLSF RAEAFAVHLC VKLFHCTPAD LPEDAREQLL 1020 GWLKGAPACT ELYIRSGCVH LTVTAYVDVV TYQQVLANGA AQAAHHLIAQ ASQVWRRGVM 1080 LVEVMNRAVL VSDGVPGPEF GLDAVCSGAF SRVEPPVAMA GQVCVLEAHG GPAAADIADS 1140 AVLCRANGRY YDTQVEEVTG LAAGAGRKFF VRLPPDIPPG VIYLELQHGP FVGGACPALV 1200 MPPERAAAAV ELLQALRARD ALLKGGWLPA DQCLAISRAT TDALLCQMGL VMRALSHGTS 1260 DVAPSSALPR PEGVPEALVL VSSLQQPASA ALAYGMLQFA CTWGLPHLSS FLLQSISLDR 1320 STSAAVGMQQ PSPLTVSTGA SAGKDWTVSV PHSVMGGSGL DVLAKLAAQI GQQTVPAGQA 1380 *

Sequence ? help Back to Top

Protein Sequence Length: 1381 aa Download sequence Send to blast

MPAAAAAAMK FTSDGDTAAG VAKPRWRPCV RAVGVLCRGW WRTAVPGTEQ SDALSVLGSA  60
RAKEVRPYRH QAPRLKRTAP RPCSVPEAPF EQVKPFGMRL DLLHRSSSGL SSDRGQAVPQ  120
LLTLQRSLAL PLLLNAPNGL QRQDRGPAVE DCTRDVCELS TYHFRYRICN VHIRLPAFMR  180
QGKLQRFCQQ CGRCHELSEF EGSQRSCRAQ LDRHNARRRQ AKKNAAAAKG PGAGSAAHAA  240
GASASGQYSS STSLPASSSG GGGAVPRGGR SGAGEAGLLG PRRSRDPALS AAAAGLFSGA  300
DDEDAAADAA TLLSVSQPRP ALLPQPEQQP SASRLGSSRL SAFAQYSGEP AVGDAATAAR  360
TGSGAMRAVT PTDASERRLG SQMLRQGSEK SRQQQITSSS ESAAAGVYDT SPGRADAEEA  420
TSQARRQSHS VGEEAASLEP AVRRRSGNLP AHGNERVGSA PGPSGKTSPS PGAASRFLDS  480
AAAQGFAAVL SRAAAAALQE AAAEQPPKMH DIVPGVAAGV QMGPIEPQPT PFSALASASL  540
SEAPTTQLSI SPRAPEAMSA TFPPSVSPAA ATAAVDLKSG IQASRSLSES MLPGESPPSW  600
AGTAKRTASV ARPLDRSGLM SATGAPSVSN SAAGSAELLA ARSRLALERN AMVLRGLQQS  660
MAADGSGRKV SSSASIALTQ RGNSTQSSMD LYVPDAAAAA AASASGADAA AARLPSADKS  720
PNRPPPFPQP PRGGQPGRAA QGEASPQQQE PYEDAVRHWL HFGQQIAAST KPGPQGLLPH  780
SLGLQAVNYL AGEVGAAAAS AEAGVQELPL PVQLAGKEDR QVLAGSLPEG LRTALGLSMG  840
QPVGQPQRKG THIDAPALAA AGEGPGAAVA PPSLLSQAEA AAAAAAQPSQ TVQAQLAASA  900
AAAAAQQSLY LPMARSTAQI GMAGADQAGA AAAAVAGAAQ LQAANPLSYQ FYQMLLGSMA  960
SAAPKQQLQQ QQAAFLENVA AANAAALLSF RAEAFAVHLC VKLFHCTPAD LPEDAREQLL  1020
GWLKGAPACT ELYIRSGCVH LTVTAYVDVV TYQQVLANGA AQAAHHLIAQ ASQVWRRGVM  1080
LVEVMNRAVL VSDGVPGPEF GLDAVCSGAF SRVEPPVAMA GQVCVLEAHG GPAAADIADS  1140
AVLCRANGRY YDTQVEEVTG LAAGAGRKFF VRLPPDIPPG VIYLELQHGP FVGGACPALV  1200
MPPERAAAAV ELLQALRARD ALLKGGWLPA DQCLAISRAT TDALLCQMGL VMRALSHGTS  1260
DVAPSSALPR PEGVPEALVL VSSLQQPASA ALAYGMLQFA CTWGLPHLSS FLLQSISLDR  1320
STSAAVGMQQ PSPLTVSTGA SAGKDWTVSV PHSVMGGSGL DVLAKLAAQI GQQTVPAGQA  1380
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-16	149	220	13	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649040.1	0.0	hypothetical protein COCSUDRAFT_61925
TrEMBL	I0Z1H7	0.0	I0Z1H7_COCSC; Uncharacterized protein
STRING	XP_005649040.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-18	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17042498

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]