PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2614_g

Common Name

COCSUDRAFT_61831

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

Nin-like

Protein Properties

Length: 1705aa MW: 177189 Da PI: 6.5149

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2614_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	27.9	4.7e-09	574	616	4	46
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++s+ +l+++F p+++AA Lgv L r CR+++++ WP+ Genemark1.2614_g 574 QLSFAELKAHFGVPLTEAATRLGVQRQDLVRSCREHNLEGWPR 616 79****************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.671	557	643	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-8	575	616	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1705 aa Download sequence Send to blast
MHTNGEAHKL QDRKTHVIAE ALLGVSFLKR SVEVSDRDFG AITLMEAAPT GSLREKLQQA 60 VYGFGQLAGC VCQGALVQVW LPVLNASTGT CDDLQTKGQP WSISGLQDTQ LCLFRADCSE 120 VTISAANDNA SCETVRGALQ RREVSVYADV CALPAENYSR AAKATKLGVH GSMLVPLFPH 180 KDLSLAGPVA VLELLQLGAD VTCFPALFNW LLEKLPMLNL HIPREIAHWH DAAGLDVMAK 240 AQLGADTGPS TSATAAGSQQ EQPATAHTPG SSTPASPISI IPQRPKVSSD EDRPGSAKSA 300 SLENAQPPPH GSAGAGPAQP SGRGNTPAAR RAHTEQRLSG MEQAQMLQQE AEGAGQARAS 360 GRGNAGSGMN RAEQQEAQQT RRQSRHGEQR QSEMLDDARM SEEWALLGSE GAGQPRASGR 420 GNTPSGVSGH AEQRQGVLQR SHASEQGAQE AAPAAAGPAR GRATRGARVC DVGAESPAGS 480 GERPRTSAPR QKGERSKAGV DSAAAEERPF SPGSLVSVGT LGNSHVSEAE HQAHDLASAR 540 GEQPDLAPET HHRRAPLAAD IGEDSGESSG RALQLSFAEL KAHFGVPLTE AATRLGVQRQ 600 DLVRSCREHN LEGWPRLSLS VNDAARSEGV PVSISSLPSD VDAAEMAAFV PFGPKAHRTT 660 PASSWRTNSV HTMPLRQGEA GGPGWQLGGR SRRAKAAAAA CHSANAGGDA LMFEPEMDPV 720 GSPQEEGESN NWVGYAKGLM LPVRSPRETR MHGEGLDEAA AQLPLSGDAD AEQRQPQSSC 780 WQKDNDPFGD TRWENWERLR WSQGADSAGR QPPPPGDVPP SGSTFTGTSL AQCLGFTREH 840 GISTADIVEA AAMIGMAPLA PDQAPACMGS PPPITSGQPR ALQQSTIDTL WELNSMEPGP 900 QRQVLPSQQE QVMSTPQSGL LPPSQPTQSE TCRRALLGDL DTAAERAAAQ AQMGSLSGPS 960 EDVRRAIHQG ICARERAPFS SGCTTAAATG GPHDEGTPTA QPSASGTTIS DCAVGARGAA 1020 DASETADSGE SREQSLPSWS RAAGKGKKKK ALGAKRGGRG RGRGRGHGRR KRGDGGNRSL 1080 AVATADAGCG PRLFRGGGRP RLRLRIKGPS AERGSPPPPP PQQEQNTSPA ELPAQPVEDL 1140 HAAQSSEQPE SAAAEQPSVQ QEVAAAAQPL AAAEVAAPCR PLLPPAEPAV SEPLPPHKAI 1200 GIVPVSVPPR STQSVPLPCT PPLDNDEEVT SAEVTSAEVA SAPSSADTAQ NAPEPCSTAS 1260 LSQEENAPTD ASPETHAASA PPMLAAAATA QTGSPEKAAA ATATEECSGQ RQDTASGRDA 1320 QTAAPRAKEA AAAAKPRMQK RLTLAPAPAV AGRQRWAGGG SRGSSGEARG GPKKRGRPPH 1380 MVPHPHTGQL VPKRDLIAAR IDPLTGECRS GKKRKAKAAA AAAAKNSSPE NPAAEEAPFA 1440 VLGRKRKAKA AAAAPAKEAS PEIPAAEEAP FAVPSRSDKQ KRPVKKSRRV IEAEEAQQDL 1500 GSSPEPEAPA HDETAAAADA AGDDDRHSQS DGEAEVERVP KRKQFKLQAL LADCPAGHHP 1560 ETPTRGTSAL VYMSTPTSRP RNALLASPTA RKFPAATEQE ITCDEQLPER LPEPSEAALQ 1620 GFLVDALNFS PPRPLSGVPP FGGGVPPFSG GGSLFGGGGG SVSESPLPRL HDADQMFYGC 1680 PLGDLGTAAF TDLAESSFSF GCFT*

Sequence ? help Back to Top

Protein Sequence Length: 1705 aa Download sequence Send to blast

MHTNGEAHKL QDRKTHVIAE ALLGVSFLKR SVEVSDRDFG AITLMEAAPT GSLREKLQQA  60
VYGFGQLAGC VCQGALVQVW LPVLNASTGT CDDLQTKGQP WSISGLQDTQ LCLFRADCSE  120
VTISAANDNA SCETVRGALQ RREVSVYADV CALPAENYSR AAKATKLGVH GSMLVPLFPH  180
KDLSLAGPVA VLELLQLGAD VTCFPALFNW LLEKLPMLNL HIPREIAHWH DAAGLDVMAK  240
AQLGADTGPS TSATAAGSQQ EQPATAHTPG SSTPASPISI IPQRPKVSSD EDRPGSAKSA  300
SLENAQPPPH GSAGAGPAQP SGRGNTPAAR RAHTEQRLSG MEQAQMLQQE AEGAGQARAS  360
GRGNAGSGMN RAEQQEAQQT RRQSRHGEQR QSEMLDDARM SEEWALLGSE GAGQPRASGR  420
GNTPSGVSGH AEQRQGVLQR SHASEQGAQE AAPAAAGPAR GRATRGARVC DVGAESPAGS  480
GERPRTSAPR QKGERSKAGV DSAAAEERPF SPGSLVSVGT LGNSHVSEAE HQAHDLASAR  540
GEQPDLAPET HHRRAPLAAD IGEDSGESSG RALQLSFAEL KAHFGVPLTE AATRLGVQRQ  600
DLVRSCREHN LEGWPRLSLS VNDAARSEGV PVSISSLPSD VDAAEMAAFV PFGPKAHRTT  660
PASSWRTNSV HTMPLRQGEA GGPGWQLGGR SRRAKAAAAA CHSANAGGDA LMFEPEMDPV  720
GSPQEEGESN NWVGYAKGLM LPVRSPRETR MHGEGLDEAA AQLPLSGDAD AEQRQPQSSC  780
WQKDNDPFGD TRWENWERLR WSQGADSAGR QPPPPGDVPP SGSTFTGTSL AQCLGFTREH  840
GISTADIVEA AAMIGMAPLA PDQAPACMGS PPPITSGQPR ALQQSTIDTL WELNSMEPGP  900
QRQVLPSQQE QVMSTPQSGL LPPSQPTQSE TCRRALLGDL DTAAERAAAQ AQMGSLSGPS  960
EDVRRAIHQG ICARERAPFS SGCTTAAATG GPHDEGTPTA QPSASGTTIS DCAVGARGAA  1020
DASETADSGE SREQSLPSWS RAAGKGKKKK ALGAKRGGRG RGRGRGHGRR KRGDGGNRSL  1080
AVATADAGCG PRLFRGGGRP RLRLRIKGPS AERGSPPPPP PQQEQNTSPA ELPAQPVEDL  1140
HAAQSSEQPE SAAAEQPSVQ QEVAAAAQPL AAAEVAAPCR PLLPPAEPAV SEPLPPHKAI  1200
GIVPVSVPPR STQSVPLPCT PPLDNDEEVT SAEVTSAEVA SAPSSADTAQ NAPEPCSTAS  1260
LSQEENAPTD ASPETHAASA PPMLAAAATA QTGSPEKAAA ATATEECSGQ RQDTASGRDA  1320
QTAAPRAKEA AAAAKPRMQK RLTLAPAPAV AGRQRWAGGG SRGSSGEARG GPKKRGRPPH  1380
MVPHPHTGQL VPKRDLIAAR IDPLTGECRS GKKRKAKAAA AAAAKNSSPE NPAAEEAPFA  1440
VLGRKRKAKA AAAAPAKEAS PEIPAAEEAP FAVPSRSDKQ KRPVKKSRRV IEAEEAQQDL  1500
GSSPEPEAPA HDETAAAADA AGDDDRHSQS DGEAEVERVP KRKQFKLQAL LADCPAGHHP  1560
ETPTRGTSAL VYMSTPTSRP RNALLASPTA RKFPAATEQE ITCDEQLPER LPEPSEAALQ  1620
GFLVDALNFS PPRPLSGVPP FGGGVPPFSG GGSLFGGGGG SVSESPLPRL HDADQMFYGC  1680
PLGDLGTAAF TDLAESSFSF GCFT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1055	1065	RGGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648950.1	0.0	hypothetical protein COCSUDRAFT_61831
TrEMBL	I0Z187	0.0	I0Z187_COCSC; Uncharacterized protein
STRING	XP_005648950.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17042416

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]