PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2565_g

Common Name

COCSUDRAFT_61775

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

CAMTA

Protein Properties

Length: 1550aa MW: 165677 Da PI: 8.1256

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2565_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	145.4	1.5e-45	95	216	2	116
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs.... 88 +k ++ wlkn+e++++L ++++++l ++++ p+ gsl+L++r+ vr+frkDG++w+kk dgktvrE+hekLKvg+ve+l+cyYah+ Genemark1.2565_g 95 HKAQSAWLKNTEVCDLLLHYAEYNLPVarDPPNLPPGGSLFLFDRRAVRFFRKDGHNWRKKADGKTVRETHEKLKVGNVEMLNCYYAHAdtee 187 55699****************9876679******************************************************96666 PP CG-1 89 ..eenptfqrrcywlLeeelekivlvhyle 116 ++ + +qrrcywlLe+e ++ivlvhyl+ Genemark1.2565_g 188 gaQQATRLQRRCYWLLESE-DDIVLVHYLN 216 6567789********.******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	53.367	90	223	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-53	93	218	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.4E-44	97	216	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:1.25.40.20	1.3E-12	692	719	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF81296	2.96E-14	837	922	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	3.59E-11	1051	1152	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-12	1053	1152	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.03E-10	1054	1163	No hit	No description
PROSITE profile	PS50297	12.063	1059	1162	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1550 aa Download sequence Send to blast
MQPLEGPLAR MDSDADVKLI IAMDKGGCEA NVVLRRDAQQ EDILKAYVQG YMLLHSNAPM 60 GQQPQRLPPG TAKLPAQSLS PDNPRFPQKV RDILHKAQSA WLKNTEVCDL LLHYAEYNLP 120 VARDPPNLPP GGSLFLFDRR AVRFFRKDGH NWRKKADGKT VRETHEKLKV GNVEMLNCYY 180 AHADTEEGAQ QATRLQRRCY WLLESEDDIV LVHYLNIDKA KGKTEDSWAP SDPEMGRRPG 240 FTVTSGGVHG MPGLGIQGLA GHPAHQLLQQ HHHQQHPVDP YIPLMPSLSL DSFFGAYDDR 300 DAAQRAQAPP PMMENVLPAW EDLSNGPSNS LQAAADWRSM LRGDSLSMGL SEGPTAALVE 360 HGANMMMIEQ GAQQPETWAQ DIPVAMRTPS LEARQARAAA VMRQNAELQQ RQSSLERRAA 420 YQKSLLAANR DQMQARPQSP LLFRQHQAAA AAMLQQAQQG GQANGMPYNL NAFQQRLLAA 480 ARQGPPGAGG GPMHGQMPGI GFRPQEPQAA AQAAALAGLA GQMQPPHYNQ QMPPPPPPQR 540 PFMAANTSGA SAAPGVGMPQ ARLPPLQQGA YQGGPAAGPV PADWARAYRE QQHKAAQAAI 600 ARSAKWGTTD PPLRPVPLRQ GSAPGPLDIS PSGSAGPSPG KPPLAATEGF PKMSKLDALL 660 MQQQQQQQQH SGSSSGEGKQ TMSSPGALGA HASASGDQIL HHASSAGQLG AIGTQVKMDE 720 TASEGTVTGT PLGRAERPAS KVAKALALEA QLRSVDGAVM EQLQTARAES GCSASLDSKV 780 QKLEEDLDHL EASSRQLLQD SVQGPGMEAA GVAMQEPATS GTHTSSLSHA PSASLELLDF 840 SPEWDFTLGG TKVIVTCREV DGDITSNCPV CVMFDKEQVP AARLQAGVYR CHAPPHEAGT 900 VGLCVTYGDG RPRSNVQPFT YRGTPLTARA QDDLARAAIP DRDLQLRLIH MLMSSSKGAT 960 SSSTVSPASP SNSSDSNTHK QHASPSRTAA PTAGSATVEV ALEDNPNALQ YLSDDLREKL 1020 LQTLLERRLK QFTSDVREGK AQQGSGWSPS FAVNRRAQSG LALVHILAAL GYDWGLQLLI 1080 PLGALLDLQD AWGRTALHWA ATYACEATVV LLLVRCAHPA PLSHGGEAQP RATPADMAAG 1140 NGHAGIAAFL SEQALLRLAK DNNVSLDEPA DSRTGDQSMS ALRKRARSLR RADSASELPL 1200 LREAMAAPDG ASKFPEEEGD EGTSPKEVLA RVKKLAERVR QALTRAACRR AAMEQQSLRR 1260 HKKEGDAVAR IESSLQAWQA VQQAVQRGIA QSDSDAAARR LVRLGERISC INACLRDAIK 1320 RSLGCGGASS ALAPVDEAAA LPITGNSMVL DYGSDSDAHA MAGDSLLRRR SLIRLRESRR 1380 RDSITKIKGF ESDTSIRQFL ARGREGSKAD EGGPSQLDIR DLRSLSLSFP SFSVVGPPIG 1440 VSLPDCDLRE LRNFIAGASA KVHRSAFGTL ASASNAKAAA APARAGAAPE ASAEMALVQK 1500 AVAHIEALQE EGPGHAQYLR LCQAYTQLTT TQPWGTFKQA RRGSLSNAV*

Sequence ? help Back to Top

Protein Sequence Length: 1550 aa Download sequence Send to blast

MQPLEGPLAR MDSDADVKLI IAMDKGGCEA NVVLRRDAQQ EDILKAYVQG YMLLHSNAPM  60
GQQPQRLPPG TAKLPAQSLS PDNPRFPQKV RDILHKAQSA WLKNTEVCDL LLHYAEYNLP  120
VARDPPNLPP GGSLFLFDRR AVRFFRKDGH NWRKKADGKT VRETHEKLKV GNVEMLNCYY  180
AHADTEEGAQ QATRLQRRCY WLLESEDDIV LVHYLNIDKA KGKTEDSWAP SDPEMGRRPG  240
FTVTSGGVHG MPGLGIQGLA GHPAHQLLQQ HHHQQHPVDP YIPLMPSLSL DSFFGAYDDR  300
DAAQRAQAPP PMMENVLPAW EDLSNGPSNS LQAAADWRSM LRGDSLSMGL SEGPTAALVE  360
HGANMMMIEQ GAQQPETWAQ DIPVAMRTPS LEARQARAAA VMRQNAELQQ RQSSLERRAA  420
YQKSLLAANR DQMQARPQSP LLFRQHQAAA AAMLQQAQQG GQANGMPYNL NAFQQRLLAA  480
ARQGPPGAGG GPMHGQMPGI GFRPQEPQAA AQAAALAGLA GQMQPPHYNQ QMPPPPPPQR  540
PFMAANTSGA SAAPGVGMPQ ARLPPLQQGA YQGGPAAGPV PADWARAYRE QQHKAAQAAI  600
ARSAKWGTTD PPLRPVPLRQ GSAPGPLDIS PSGSAGPSPG KPPLAATEGF PKMSKLDALL  660
MQQQQQQQQH SGSSSGEGKQ TMSSPGALGA HASASGDQIL HHASSAGQLG AIGTQVKMDE  720
TASEGTVTGT PLGRAERPAS KVAKALALEA QLRSVDGAVM EQLQTARAES GCSASLDSKV  780
QKLEEDLDHL EASSRQLLQD SVQGPGMEAA GVAMQEPATS GTHTSSLSHA PSASLELLDF  840
SPEWDFTLGG TKVIVTCREV DGDITSNCPV CVMFDKEQVP AARLQAGVYR CHAPPHEAGT  900
VGLCVTYGDG RPRSNVQPFT YRGTPLTARA QDDLARAAIP DRDLQLRLIH MLMSSSKGAT  960
SSSTVSPASP SNSSDSNTHK QHASPSRTAA PTAGSATVEV ALEDNPNALQ YLSDDLREKL  1020
LQTLLERRLK QFTSDVREGK AQQGSGWSPS FAVNRRAQSG LALVHILAAL GYDWGLQLLI  1080
PLGALLDLQD AWGRTALHWA ATYACEATVV LLLVRCAHPA PLSHGGEAQP RATPADMAAG  1140
NGHAGIAAFL SEQALLRLAK DNNVSLDEPA DSRTGDQSMS ALRKRARSLR RADSASELPL  1200
LREAMAAPDG ASKFPEEEGD EGTSPKEVLA RVKKLAERVR QALTRAACRR AAMEQQSLRR  1260
HKKEGDAVAR IESSLQAWQA VQQAVQRGIA QSDSDAAARR LVRLGERISC INACLRDAIK  1320
RSLGCGGASS ALAPVDEAAA LPITGNSMVL DYGSDSDAHA MAGDSLLRRR SLIRLRESRR  1380
RDSITKIKGF ESDTSIRQFL ARGREGSKAD EGGPSQLDIR DLRSLSLSFP SFSVVGPPIG  1440
VSLPDCDLRE LRNFIAGASA KVHRSAFGTL ASASNAKAAA APARAGAAPE ASAEMALVQK  1500
AVAHIEALQE EGPGHAQYLR LCQAYTQLTT TQPWGTFKQA RRGSLSNAV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1181	1187	LRKRARS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650122.1	0.0	hypothetical protein COCSUDRAFT_61775
TrEMBL	I0Z4K9	0.0	I0Z4K9_COCSC; Uncharacterized protein
STRING	XP_005650122.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5132	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	7e-41	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Entrez Gene	17043580

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]