PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Genemark1.2377_g | ||||||||
Common Name | COCSUDRAFT_61587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | C3H | ||||||||
Protein Properties | Length: 134aa MW: 14079.5 Da PI: 6.7286 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.2e-08 | 26 | 50 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k + C+++++ G+C+ G++C FaH+p Genemark1.2377_g 26 KSKMCSYHLQ-GHCSKGSSCLFAHSP 50 6678**9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.084 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-4 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 25 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-10 | 25 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 30 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.91E-7 | 101 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.4E-6 | 106 | 130 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS51698 | 10.997 | 107 | 133 | IPR003613 | U box domain |
Pfam | PF04564 | 1.1E-5 | 108 | 130 | IPR003613 | U box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MQQHKHGSST TGSQPAERAS SGHQSKSKMC SYHLQGHCSK GSSCLFAHSP HELQHPPAPT 60 VRNGASAAAT HSTPSYEARE NGHVNARELK GNMAAPPVNA EPFEDDEAPD SFCCPITHEI 120 LRDPVVACDG GAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649912.1 | 1e-94 | hypothetical protein COCSUDRAFT_61587 | ||||
TrEMBL | I0Z3Z9 | 3e-93 | I0Z3Z9_COCSC; Uncharacterized protein | ||||
STRING | XP_005649912.1 | 5e-94 | (Coccomyxa subellipsoidea) |
Link Out ? help Back to Top | |
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Entrez Gene | 17043370 |
Publications ? help Back to Top | |||
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