PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.2217_g

Common Name

COCSUDRAFT_61427

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

HB-other

Protein Properties

Length: 1432aa MW: 153764 Da PI: 5.6243

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.2217_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.3	6e-14	20	67	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + e+Lee+F+ n +psa+e++ LA++ +Lt +qV++WF NrR k + Genemark1.2217_g 20 HASKEQLEEFFAGNANPSAAEKASLAEQSDLTVQQVSTWFGNRRKKAR 67 4556789**************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.88	9	69	IPR001356	Homeobox domain
SMART	SM00389	1.1E-12	12	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-12	13	67	IPR009057	Homeodomain-like
CDD	cd00086	2.04E-12	15	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-13	15	74	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-11	20	67	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
Pfam	PF12253	1.5E-20	652	720	IPR022043	Chromatin assembly factor 1 subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000724	Biological Process	double-strand break repair via homologous recombination
GO:0006334	Biological Process	nucleosome assembly
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0009555	Biological Process	pollen development
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0010026	Biological Process	trichome differentiation
GO:0031507	Biological Process	heterochromatin assembly
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0033186	Cellular Component	CAF-1 complex
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1432 aa Download sequence Send to blast
MSAAHKPEEQ EDQRKRKRAH ASKEQLEEFF AGNANPSAAE KASLAEQSDL TVQQVSTWFG 60 NRRKKARLAQ AAQADGAAGP AAAQAPEPII IDDEDADMAA EDMVESSEHA ARTAVAEPAA 120 CMPEQQAGPP ATPAAVCSVH REEQIKQLKE EIAELESYVT SRPHPIVTLD FAKFEFILQK 180 SQVGIWLVGC SLPLSEATEK LWYHCKGDYN PGSPLTKAAI RNMIIEVAAR KSYAAKDAGS 240 DKVDALEDTT ASFLWQWEVR DQKYLPVAHR NEGIQHKKQM RKVAARLTAL AAACKALEGK 300 GTDKQVAKAL AKLDKLEKPL LSPAAAAADS AAENPSASQP APAGGEGTPG ADASSVPAAD 360 KEADEAEKAK PAQEKQEADA QKELARLEKQ KAAEEKERAR IEAAREKERQ RLEKEAQKKE 420 KEAEKERQRA AKEAEKERQR AEKEAAKTGF ESRDALCKSR NLMNRFFKTP AKTGGEAEGG 480 SSQPLKTPMS ALPLRHPFHE IFTPAPESAR LPVPEDISAA FDEAIAAAKQ RGVSELEEGM 540 QHIRQSWKSR PRHKRIRGPP SEKREIIIII IIITTTTIII IIIIVIIIIM TIIIIIIIII 600 IIIIIIIIII IIIIIIIIII IIIVLMKIII IVIIIMIEEF GRLEKARLWR RKFLWFAASK 660 RPAYYGSWSA ASPTVTGRRP LARDDALDYE VMSDEEWEEE PEGENLSDDD MEEEEDEAED 720 SCGDGFVVPN GYISDDEGVA SVQQDLDDLA AELDDEATGA EVAAGGDAVQ RDRLRLLNAA 780 LDRATRANRP IIITRLPMPP APSQDSARPA HLTGDPALLS ALQPLVLTTK VKIRMLPPPE 840 TEDAPGDVAA DGAAGPATAR GRGRAAAQEQ EELTPDLVQF LLSHPELKAV AKVAKAFTEA 900 HPDRKVVKKW VHNKVKDIAE HSGGAWVIKQ SSASAQQPAD AEQSPASTPL QPRPSSADQP 960 PLASHPAGEA ATSAAVTPAT AGPLDRFLRA GSQPQATPQP QRAAAAAAVQ GLGEVVILDE 1020 DEGAPAPMDV DAPPAAAAAQ TPSTKDEIRG TADPFWRGLA ESIAANSLQV AEQLQRGFKA 1080 SAAGELVRAV PSFVLTAMVK GLASGQCSRL LQSCLLKALA QLLRLLVAAG DTSNRVPTPT 1140 KVFRDERSAP VAVSLDEMLA CRSLLGALQA CMRAKQNRMP QVAQPAAQLL AAMLAVGAAE 1200 LGTPAAGSQE SQQPSLAAAA IKEAAELRLH VARDDAWHVL FTELLGPTSD ASVVECVAKT 1260 LGTIGRDAAA ARTLLQRYSD IFSDKELHGK LQKLLLAASA VATKHRQKRA MEDCLSFLGD 1320 LLSLQEADGP VRNATAVTSF GALLRSLEET VSAHIPSEPA DPPAGNTRCL LAALKVGAFA 1380 ARFATTHKQC LSAMQRSLPG PIAAHESVWE KLQVADIAQA LLAQLSTAPP Q*

Sequence ? help Back to Top

Protein Sequence Length: 1432 aa Download sequence Send to blast

MSAAHKPEEQ EDQRKRKRAH ASKEQLEEFF AGNANPSAAE KASLAEQSDL TVQQVSTWFG  60
NRRKKARLAQ AAQADGAAGP AAAQAPEPII IDDEDADMAA EDMVESSEHA ARTAVAEPAA  120
CMPEQQAGPP ATPAAVCSVH REEQIKQLKE EIAELESYVT SRPHPIVTLD FAKFEFILQK  180
SQVGIWLVGC SLPLSEATEK LWYHCKGDYN PGSPLTKAAI RNMIIEVAAR KSYAAKDAGS  240
DKVDALEDTT ASFLWQWEVR DQKYLPVAHR NEGIQHKKQM RKVAARLTAL AAACKALEGK  300
GTDKQVAKAL AKLDKLEKPL LSPAAAAADS AAENPSASQP APAGGEGTPG ADASSVPAAD  360
KEADEAEKAK PAQEKQEADA QKELARLEKQ KAAEEKERAR IEAAREKERQ RLEKEAQKKE  420
KEAEKERQRA AKEAEKERQR AEKEAAKTGF ESRDALCKSR NLMNRFFKTP AKTGGEAEGG  480
SSQPLKTPMS ALPLRHPFHE IFTPAPESAR LPVPEDISAA FDEAIAAAKQ RGVSELEEGM  540
QHIRQSWKSR PRHKRIRGPP SEKREIIIII IIITTTTIII IIIIVIIIIM TIIIIIIIII  600
IIIIIIIIII IIIIIIIIII IIIVLMKIII IVIIIMIEEF GRLEKARLWR RKFLWFAASK  660
RPAYYGSWSA ASPTVTGRRP LARDDALDYE VMSDEEWEEE PEGENLSDDD MEEEEDEAED  720
SCGDGFVVPN GYISDDEGVA SVQQDLDDLA AELDDEATGA EVAAGGDAVQ RDRLRLLNAA  780
LDRATRANRP IIITRLPMPP APSQDSARPA HLTGDPALLS ALQPLVLTTK VKIRMLPPPE  840
TEDAPGDVAA DGAAGPATAR GRGRAAAQEQ EELTPDLVQF LLSHPELKAV AKVAKAFTEA  900
HPDRKVVKKW VHNKVKDIAE HSGGAWVIKQ SSASAQQPAD AEQSPASTPL QPRPSSADQP  960
PLASHPAGEA ATSAAVTPAT AGPLDRFLRA GSQPQATPQP QRAAAAAAVQ GLGEVVILDE  1020
DEGAPAPMDV DAPPAAAAAQ TPSTKDEIRG TADPFWRGLA ESIAANSLQV AEQLQRGFKA  1080
SAAGELVRAV PSFVLTAMVK GLASGQCSRL LQSCLLKALA QLLRLLVAAG DTSNRVPTPT  1140
KVFRDERSAP VAVSLDEMLA CRSLLGALQA CMRAKQNRMP QVAQPAAQLL AAMLAVGAAE  1200
LGTPAAGSQE SQQPSLAAAA IKEAAELRLH VARDDAWHVL FTELLGPTSD ASVVECVAKT  1260
LGTIGRDAAA ARTLLQRYSD IFSDKELHGK LQKLLLAASA VATKHRQKRA MEDCLSFLGD  1320
LLSLQEADGP VRNATAVTSF GALLRSLEET VSAHIPSEPA DPPAGNTRCL LAALKVGAFA  1380
ARFATTHKQC LSAMQRSLPG PIAAHESVWE KLQVADIAQA LLAQLSTAPP Q*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649729.1	0.0	hypothetical protein COCSUDRAFT_61427
TrEMBL	I0Z3G6	0.0	I0Z3G6_COCSC; Uncharacterized protein
STRING	XP_005649729.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4880	2	2

Link Out ? help Back to Top
Entrez Gene	17043187

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]