PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.1027_g

Common Name

COCSUDRAFT_59065

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 445aa MW: 48176.2 Da PI: 10.4554

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.1027_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	351	400	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 +rW+ eE + l+++v+ lG+g+W++I + gR ++k++w+++ Genemark1.1027_g 351 KRWSDEERDALINGVTILGTGHWAAILDRYTtifaPGRNSVDIKDKWRNL 400 69**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.187	345	405	IPR017930	Myb domain
SMART	SM00717	2.0E-8	349	403	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	351	402	IPR009057	Homeodomain-like
CDD	cd11660	3.69E-16	351	402	No hit	No description
Pfam	PF00249	1.4E-8	351	400	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.13E-13	352	409	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MRTRNAVYQP TEALETETKS HEKLKAKRAK KKKMGADLLR KREAKKAAEQ AEQAELDTDT 60 TEEASASPKR GRGRPRKSLA TIAAPFRAPI TSVGPSSPGG PSLPQRPAPA SPSVRQAREP 120 PQQPTGGGSG AVRQLAAAAA RPQHVPTWGL AQDAARKKAE DAAVEVARQS GRYVDVAVHS 180 FITEIPPSRL AVPEDATINF LRRQIQYRVE ELGTHMPADA LEVQVKDTWG TLTPTTSFTA 240 TGAEKTVRSY GLVPGQQHHI WVIVVDDTAA RDQRAATAAL IDMPGAPTPW PSRLAPAAAG 300 SPVPARRFTE PAQHAVAQYQ AELSPARPAR APDAAANPAT ESPGRRRQKN KRWSDEERDA 360 LINGVTILGT GHWAAILDRY TTIFAPGRNS VDIKDKWRNL VKLAQQKREA RGGTLPREQV 420 VKILEVIHRE EHPDSEPEDA PDGA*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MRTRNAVYQP TEALETETKS HEKLKAKRAK KKKMGADLLR KREAKKAAEQ AEQAELDTDT  60
TEEASASPKR GRGRPRKSLA TIAAPFRAPI TSVGPSSPGG PSLPQRPAPA SPSVRQAREP  120
PQQPTGGGSG AVRQLAAAAA RPQHVPTWGL AQDAARKKAE DAAVEVARQS GRYVDVAVHS  180
FITEIPPSRL AVPEDATINF LRRQIQYRVE ELGTHMPADA LEVQVKDTWG TLTPTTSFTA  240
TGAEKTVRSY GLVPGQQHHI WVIVVDDTAA RDQRAATAAL IDMPGAPTPW PSRLAPAAAG  300
SPVPARRFTE PAQHAVAQYQ AELSPARPAR APDAAANPAT ESPGRRRQKN KRWSDEERDA  360
LINGVTILGT GHWAAILDRY TTIFAPGRNS VDIKDKWRNL VKLAQQKREA RGGTLPREQV  420
VKILEVIHRE EHPDSEPEDA PDGA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	KRGRGRPRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005651082.1	0.0	hypothetical protein COCSUDRAFT_59065
TrEMBL	I0Z7B9	0.0	I0Z7B9_COCSC; Uncharacterized protein
STRING	XP_005651082.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6506	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	3e-07	telomere repeat binding factor 3

Link Out ? help Back to Top
Entrez Gene	17044548

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]