PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29837.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10526.1 Da    PI: 9.5339
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29837.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.31.8e-32959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gkl eys+
  PK29837.1  9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSHKGKLSEYST 59
               79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
CDDcd002652.74E-41279No hitNo description
SuperFamilySSF554558.37E-36288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSH KGKLSEYSTD  60
SCMEKILERY ERYSYAERQL VSMDSETQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A4e-21174173MEF2 CHIMERA
6bz1_B4e-21174173MEF2 CHIMERA
6bz1_C4e-21174173MEF2 CHIMERA
6bz1_D4e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061531e-82KJ506153.1 Ficus carica MADS-box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018303.15e-55truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_024018304.15e-55truncated transcription factor CAULIFLOWER A isoform X2
SwissprotD7KWY62e-50AP1_ARALL; Floral homeotic protein APETALA 1
SwissprotQ6E6S71e-50AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2P5E2G49e-54A0A2P5E2G4_PARAD; MADS-box transcription factor
STRINGXP_010091613.13e-54(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Hu TT, et al.
    The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
    Nat. Genet., 2011. 43(5): p. 476-81
    [PMID:21478890]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]