PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 155aa MW: 17616.5 Da PI: 10.0308 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.2 | 3.8e-31 | 35 | 114 | 3 | 75 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasecea 75 +k rh k++T++g+RdRRvRlsa +a++f+d+qd+LG+d++sk+++WL+++ak+ai l ++ + ++ PK29658.1 35 ERKERHNKVSTSRGPRDRRVRLSAYTAIQFYDVQDRLGYDRPSKAVDWLIEKAKAAIASLEDLpgqnyeladfsnsvT-------QT 114 589**********************************************************99555444433222221.......11 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.016 | 36 | 94 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.1E-29 | 36 | 120 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
XKKGGKKKVG ETKRRRENSR VSLQGHGGHV SRPIERKERH NKVSTSRGPR DRRVRLSAYT 60 AIQFYDVQDR LGYDRPSKAV DWLIEKAKAA IASLEDLPGQ NYELADFSNS VTQTEQGVCQ 120 EKINQLQHYQ GCNIEAQQPL NEITMNNEII FSMAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-18 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-18 | 41 | 94 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108419.1 | 3e-46 | transcription factor TCP4 | ||||
Refseq | XP_024029269.1 | 3e-46 | transcription factor TCP4 | ||||
TrEMBL | A0A2P5FMV3 | 3e-55 | A0A2P5FMV3_TREOI; TCP transcription factor | ||||
STRING | XP_010108419.1 | 1e-45 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14863 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 9e-35 | TCP domain protein 10 |