PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 581aa MW: 64743.8 Da PI: 4.6955 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 441.9 | 4.5e-135 | 211 | 581 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA +s+g+ +a+ ++++l++++s +g+p qR+aay++e+Laar+a+s++ lykal+++e + +s++laa+++++ev+P++kf++++aN a PK29476.1 211 RQLLIDCAALLSEGNIGEASVMINQLRQMVSVEGEPSQRIAAYMVEGLAARVASSGKFLYKALKCKEPP---TSDRLAAMQILFEVCPCFKFGFMAANGA 307 689*****************************************************************9...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I ea++ e++vHi+Dfdi+qG Q+++L+q++a sR+++ p+lR+Tgv++pes+ s l+ +g+ L+k Ae lgvpf+f++ va+r++ +++++L+++p PK29476.1 308 IIEAFKDEKTVHIVDFDINQGSQYMTLIQKIAaSRKGKIPQLRLTGVDDPESVqrSVGGLKIIGQMLEKRAEDLGVPFKFQA-VASRTSLVTPSMLDCRP 406 *******************************989*****************9989999************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres +r++vEr++l+r+ivn++ PK29476.1 407 GEALVVNFAFQLHHMPDESVSTINERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYKYYSAVFESLDATLPRESPDRTNVERQCLARDIVNII 506 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l+r++ ++ y++++e g+l++gW+d++L+++S+Wr PK29476.1 507 ACEGEERIERYEVAGKWRARMTMAGFTSCPMSSNVVDSIRELIRQYCDR-YKIKDEMGALLFGWEDKSLIVASSWR 581 ***********************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.022 | 184 | 562 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-132 | 211 | 581 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MSLVRPAELS ATSYRNPKLY SLKGSSTDSS AFSTQTFGSE KRKTLYVTDS YSNESYEKYF 60 LDSPSDEIQQ PSCSSASGNS YNPQDASCYQ PRAGSSVSHL TTHNNPCDAS FMSIGDFESD 120 YLESSSPELG DFDKSTMRLK LQELERVLLN DNDDDNDGDE DMEVDVDWVG PVQSGLLNDS 180 PKESSSSDYS YLSSISSSNK EISQVSHRSP RQLLIDCAAL LSEGNIGEAS VMINQLRQMV 240 SVEGEPSQRI AAYMVEGLAA RVASSGKFLY KALKCKEPPT SDRLAAMQIL FEVCPCFKFG 300 FMAANGAIIE AFKDEKTVHI VDFDINQGSQ YMTLIQKIAA SRKGKIPQLR LTGVDDPESV 360 QRSVGGLKII GQMLEKRAED LGVPFKFQAV ASRTSLVTPS MLDCRPGEAL VVNFAFQLHH 420 MPDESVSTIN ERDQLLRMVK SLNPKLVTVV EQDVNTNTSP FFPRFIEAYK YYSAVFESLD 480 ATLPRESPDR TNVERQCLAR DIVNIIACEG EERIERYEVA GKWRARMTMA GFTSCPMSSN 540 VVDSIRELIR QYCDRYKIKD EMGALLFGWE DKSLIVASSW R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-61 | 217 | 580 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-61 | 217 | 580 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-61 | 217 | 580 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104285.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024026462.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024026463.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024026464.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2P5FPJ1 | 0.0 | A0A2P5FPJ1_TREOI; GRAS transcription factor | ||||
STRING | XP_010104285.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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