PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 21733.9 Da PI: 10.3876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 4 | 40 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ ++ +G g+W+++++ g+ R++k+c++rw +yl PK29171.1 4 FLTHITTHGHGNWSSVPKLAGLQRCGKSCRLRWINYL 40 778899*****************************97 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.6e-18 | 46 | 89 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ PK29171.1 46 KGSFTQEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 89 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.011 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 6.17E-6 | 3 | 40 | No hit | No description |
SMART | SM00717 | 4.3 | 3 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-23 | 4 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-8 | 5 | 40 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-17 | 6 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.38 | 41 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 45 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 46 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-13 | 48 | 88 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 48 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
XPIFLTHITT HGHGNWSSVP KLAGLQRCGK SCRLRWINYL RPDLRKGSFT QEEEQIIIDV 60 HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL DPQTHNLMTS SSHHQNKSQN 120 NKNFSSSFVV ISQNNNNVTK PIPKQTHIFT VSNNSSLHDH DNEITTQNNC NNMLTIPSNN 180 NTTPIFTTFX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 8 | 95 | 22 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092474.1 | 3e-72 | myb-related protein 308 | ||||
Swissprot | Q8LPH6 | 6e-55 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2P5CMP1 | 1e-77 | A0A2P5CMP1_TREOI; MYB transcription factor | ||||
STRING | XP_010092474.1 | 1e-71 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 7e-69 | myb domain protein 67 |