PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK28796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 195aa MW: 22326.1 Da PI: 10.4181 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.3e-40 | 50 | 111 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss PK28796.1 50 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 111 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 43 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.5E-34 | 51 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.003 | 54 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 56 | 92 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
XNNNNNNNKP RMELGSNNNN SSNDIIIKSN SNNNMLGSSD QRRNITRPQK DQAVNCPRCN 60 STNTKFCYYN NYSLTQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS SSSPSPLTTS 120 SPPSSSSSLQ TKKLHHHHDL LPLPFTFPNI ITHQQQQQQQ QQQQQQNPKS NQGQDLNLTF 180 PPQPSDHHYH HHHHH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912132.1 | 9e-52 | dof zinc finger protein 1-like isoform X1 | ||||
Refseq | XP_023912133.1 | 6e-52 | dof zinc finger protein 1-like isoform X2 | ||||
Swissprot | Q8LAP8 | 1e-41 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A2P5DFE1 | 7e-49 | A0A2P5DFE1_PARAD; Zinc finger transcription factor | ||||
STRING | VIT_16s0098g01420.t01 | 1e-46 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-39 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|