PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK28790.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MIKC_MADS

Protein Properties

Length: 192aa MW: 22068.2 Da PI: 7.5061

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28790.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.9	1.1e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk rqvtf+kRr g++KKA+ELSvLCd+e+ +i+fs +g+lye++s PK28790.1 9 KLIENKQSRQVTFAKRRSGLMKKAHELSVLCDVEIGLIVFSGNGRLYEFCS 59 569**********************************************96 PP
2	K-box	23.8	1.9e-09	105	163	42	100
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 d+e L++ eL + e+qLe l+ R++K +l++e +++l +ek+l+ee++ L++k+ee PK28790.1 105 DVEHLTVDELAHKERQLEALLRLTRQRKAQLMMETVSTLSDQEKQLREEKQLLENKIEE 163 7899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.6E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.431	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.37E-36	2	72	No hit	No description
SuperFamily	SSF55455	8.24E-31	2	84	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-28	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	8.556	67	167	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.2E-8	105	161	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGRGKVEMKL IENKQSRQVT FAKRRSGLMK KAHELSVLCD VEIGLIVFSG NGRLYEFCSG 60 HSLGNTIERY KTKGKEEKSS NELENCDYDG LWEDVDLLKG VSNLDVEHLT VDELAHKERQ 120 LEALLRLTRQ RKAQLMMETV STLSDQEKQL REEKQLLENK IEEMVGERGK KVEANEVKGN 180 APNSMRRVLQ LY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	1	59	1	59	Myocyte-specific enhancer factor 2B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023308.1	1e-56	truncated transcription factor CAULIFLOWER A isoform X1
TrEMBL	A0A2P5ARC8	5e-72	A0A2P5ARC8_PARAD; MADS-box transcription factor
STRING	XP_009344924.1	5e-46	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-37	MIKC_MADS family protein