PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK28773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 37458.8 Da PI: 9.1257 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 85 | 130 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ PK28773.1 85 RGHWRPIEDAKLKELVTQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 130 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 137 | 180 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ PK28773.1 137 RRAFSEEEEERLLGAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 180 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.084 | 80 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 84 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 85 | 130 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.7E-27 | 85 | 178 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 86 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-11 | 88 | 129 | No hit | No description |
PROSITE profile | PS51294 | 26.075 | 132 | 186 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 136 | 184 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 137 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-20 | 139 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-10 | 139 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
KNMSFIPSPP QLSLFKTSCD EMGFQILSSS SEKTKKEWIF PNQMENREEK RISDLNVFDE 60 IPEREEIRIR TTSGVKNVHT KLCARGHWRP IEDAKLKELV TQYGPQNWNL IAENLEGRSG 120 KSCRLRWFNQ LDPRINRRAF SEEEEERLLG AHRLYGNKWA MIARLFPGRT DNAVKNHWHV 180 IMARKHREQS NVYKRRRPSS SSTSSSCHSQ ILVPKVIDMT LSTNNNDHNY NNGSSTTEST 240 ISNTINDHES ISTCTELSLT PSSTSHHYGL KNGSFDKLLS LYKRRVGIGQ SDSNSENSAE 300 YYSVATNKSI NLTMFDPNQS QNIKED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 84 | 185 | 6 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034632 | 9e-59 | KM034632.1 Jatropha curcas clone JcMYB011 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088473.2 | 1e-107 | myb-like protein Q | ||||
Swissprot | Q5NBM8 | 5e-76 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2P5EK44 | 1e-130 | A0A2P5EK44_TREOI; MYB transcription factor | ||||
STRING | XP_010088473.1 | 1e-106 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-71 | myb domain protein 105 |