PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28516.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 155aa    MW: 18039.3 Da    PI: 9.9573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28516.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-091391154
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               +RR+++N++f +Lr+++P+       K++Ka+ L  +v YI++L
  PK28516.1  1 QRREKLNHRFYKLRSVVPNV-----SKMDKASLLADTVVYINEL 39
               7******************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.31139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-9145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-8144No hitNo description
SuperFamilySSF474591.15E-12154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
QRREKLNHRF YKLRSVVPNV SKMDKASLLA DTVVYINELK AKVEELEAKV VLENQTNKYQ  60
HQQQHQHQHQ QHHHHQMMMR PSKSSTSTNT SNTSNNNNNL DVDVKMLGSV VMIRVQCPDL  120
NYPSARLMNA LRELQLQIIH VSISSVKELL FQDVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-191551570Transcription factor MYC2
5gnj_B6e-191551570Transcription factor MYC2
5gnj_E6e-191551570Transcription factor MYC2
5gnj_F6e-191551570Transcription factor MYC2
5gnj_G6e-191551570Transcription factor MYC2
5gnj_I6e-191551570Transcription factor MYC2
5gnj_M6e-191551570Transcription factor MYC2
5gnj_N6e-191551570Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652557.17e-50PREDICTED: transcription factor MYC2-like
RefseqXP_020419037.17e-50transcription factor MYC2
TrEMBLA0A2P5AI006e-59A0A2P5AI00_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008245388.12e-49(Prunus mume)
STRINGEMJ121232e-49(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-25bHLH family protein