PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK28510.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 407aa MW: 47056.8 Da PI: 6.644

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK28510.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+++s k+ PK28510.1 7 VPPGFRFHPTDEELVDYYLRKKITSRRVDL-DVIKDVDLYKIEPWDLQElcKIGSEEQsEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAIYS-KH 104 69*************************9.99**********954555554445**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 l+g++ktLvfykgrap+g+k+dW+mheyrle PK28510.1 105 DLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.729	7	156	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRVDLDVIK DVDLYKIEPW DLQELCKIGS 60 EEQSEWYFFS HKDKKYPTGT RTNRATVAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN ATPQEEGWVV CRVFKKKIAT TSMRRSEHES PCWYDDQVSF 180 MPDLESPKHH HHHSNSSNVV VSSSNSLPNY QLLHHYYPNC KKEQSPLDHH HHLPYQLLPH 240 DHFLPLLETP KLILHPSTSS APTGLVLNHN NNVVAAFQPS ISLRSSSHDH QSADHHQQQL 300 TLHHDDHQNF HASIAYGNNN NNSSSTTTTT NTTNDLNQQQ GMDDQDDQLT DWRVLDKFVA 360 SQLSHEDNDQ DDDDRVISKG GNVIVRHNWD QKQQEMVPEN NASTSNS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRVDLDVIK DVDLYKIEPW DLQELCKIGS  60
EEQSEWYFFS HKDKKYPTGT RTNRATVAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN ATPQEEGWVV CRVFKKKIAT TSMRRSEHES PCWYDDQVSF  180
MPDLESPKHH HHHSNSSNVV VSSSNSLPNY QLLHHYYPNC KKEQSPLDHH HHLPYQLLPH  240
DHFLPLLETP KLILHPSTSS APTGLVLNHN NNVVAAFQPS ISLRSSSHDH QSADHHQQQL  300
TLHHDDHQNF HASIAYGNNN NNSSSTTTTT NTTNDLNQQQ GMDDQDDQLT DWRVLDKFVA  360
SQLSHEDNDQ DDDDRVISKG GNVIVRHNWD QKQQEMVPEN NASTSNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029028.1	1e-161	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-125	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2P5C5A1	0.0	A0A2P5C5A1_PARAD; NAC domain containing protein
STRING	XP_010108028.1	1e-156	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	1e-113	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]