PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28451.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 409aa    MW: 46587.6 Da    PI: 10.2867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28451.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-1419106195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+ ++++ ++++ l +pk+f  ++ g+   s +++l+ + g +Wev l  +k+s++ ++l+kGW++F++   L  g  vvF+++  +ef  +v 
  PK28451.1  19 FIKIILNENLGRTK-LQIPKTFWMKYCGS--LSSQVILNLPCGSRWEVGL--TKSSDGkVWLEKGWNKFAQHFSLSRGNLVVFRYEM-REF--NVI 106
                77888888888887.*******9999545..4557***************..7777777*************************965.344..444 PP
2B345.71.2e-14227324197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                f  +++ s+++ ++++ +p+ fa+++ +k+e+  + +l  ++ +sW v++++r +sg+    + +GWk Fv +n+L++g ++ F+l++  ++ +++v+++
  PK28451.1 227 FTVIMKASYTTDRRNFHIPRWFAQTYIKKEEC--KASLWISDDKSWHVQYKVRLTSGStaAEFINGWKAFVVENNLEVGSICKFELTNIvNDVSFRVSIV 324
                6677889999999*************777666..68888888********997776663355559********************987666666677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1911109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1712109IPR015300DNA-binding pseudobarrel domain
CDDcd100175.16E-1217108No hitNo description
PROSITE profilePS5086311.68818111IPR003340B3 DNA binding domain
PfamPF023621.6E-1019105IPR003340B3 DNA binding domain
SMARTSM010190.00219111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19220327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-20220326IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-16225325No hitNo description
PfamPF023621.1E-12227323IPR003340B3 DNA binding domain
SMARTSM010198.9E-5227327IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957227327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASASQRAQT KFSPTAPHFI KIILNENLGR TKLQIPKTFW MKYCGSLSSQ VILNLPCGSR  60
WEVGLTKSSD GKVWLEKGWN KFAQHFSLSR GNLVVFRYEM REFNVIIFGI TMVEIDYPSN  120
PILVKKHVHI DGDDVSFEVL EKFSLHPKSR VKSPLPCSQP HKKMKQSPLG KVMEKGSSSI  180
KVESGDTIDN TTTGLPTSKR YQKTLSVHRN ISAVERANYF QSEYPFFTVI MKASYTTDRR  240
NFHIPRWFAQ TYIKKEECKA SLWISDDKSW HVQYKVRLTS GSTAAEFING WKAFVVENNL  300
EVGSICKFEL TNIVNDVSFR VSIVKPDDDA HNYLATKLAS TSKQNVRYDA SSTKKNDKAN  360
IFRQNIILEK EEKIVVKLSD KSRKLISEGN MGNLGTSKML HLQKIPASK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-35B3 family protein