PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK28152.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 577aa    MW: 65858.4 Da    PI: 7.0942
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK28152.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1651140298
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                fk+   +++lk++rl +p +f+++ g++   +  + ++ + g +W++kl  ++++++++l++GW eFvk   ++ g +++F++dg+se   +v +f 
  PK28152.1  51 FKII-LESTLKENRLLVPQSFVKKSGES--LTESVFVKLPCGSKWKMKL--ENYKEKFWLEEGWPEFVKHYSIERGYMLTFRYDGNSEI--YVVIFG 140
                5555.367778889********999866..55579999***********..********************************997665..777765 PP
2B355.79.3e-18264364199
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                ffk  +++++   ++l +p  fa+ + +++  +++tl++++ ++++W vk+ yr ++++   +++GW++Fv +n+Lk+gD++vF l +  ++ ++ v +f
  PK28152.1 264 FFKMVMQPYYILGKNLNFPHLFAQIYlNNNRFCDVTLKVQN-KNKTWHVKYAYREHKSAaPRFQGGWRSFVVDNNLKVGDVCVFVLLKAtDDISFEVVIF 362
                899999*****************666655555766666655.88*********77776669************************887779988899998 PP

                -S CS
         B3  98 rk 99 
                r+
  PK28152.1 363 RA 364
                86 PP
3B339.11.3e-12446542198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ffk+ +++++     +++p + a+++  k   + ++ l  ++g +W  +++       ++++ v+ +GW+eF  +n+L++gD+++F+l +r+e  ++v++
  PK28152.1 446 FFKAVIQPSNKWY--MRVPLEIADQYITK---DGDMALAIPNGGQWPAQFKRrtsyATGKSAAVIYDGWNEFMTENDLEVGDVCIFELLNRTEVVFYVSI 540
                5666655555544..68889999888322...3379999999*99999995544445555569999*********************9988887788888 PP

                E- CS
         B3  97 fr 98 
                +r
  PK28152.1 541 VR 542
                77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2242142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-2243142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-1548139No hitNo description
PROSITE profilePS5086313.50749142IPR003340B3 DNA binding domain
PfamPF023621.4E-1350139IPR003340B3 DNA binding domain
SMARTSM010191.7E-1450142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-22257365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-19258364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-18263363No hitNo description
PfamPF023622.9E-15264364IPR003340B3 DNA binding domain
SMARTSM010199.1E-15264365IPR003340B3 DNA binding domain
PROSITE profilePS5086313.86264365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15440542IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-17440543IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.575444544IPR003340B3 DNA binding domain
CDDcd100172.47E-12445542No hitNo description
PfamPF023621.1E-10446542IPR003340B3 DNA binding domain
SMARTSM010197.6E-7446544IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
LGFTVHSSQF KLESPITIQI ITPLLYLQES QAKAFDFGAX EMLSSTNPQF FKIILESTLK  60
ENRLLVPQSF VKKSGESLTE SVFVKLPCGS KWKMKLENYK EKFWLEEGWP EFVKHYSIER  120
GYMLTFRYDG NSEIYVVIFG TNNVEIDYPP APVDFGKSNI DNGELRVPKR EVIDDDDDRF  180
EILDDISSCP ETGVKSSCSP PSKRVKTNPP GKLDSPSKSS GDEFATTTPK KMKYGIPKTM  240
KTLNTIERAI ALQRTNAFTS EHPFFKMVMQ PYYILGKNLN FPHLFAQIYL NNNRFCDVTL  300
KVQNKNKTWH VKYAYREHKS AAPRFQGGWR SFVVDNNLKV GDVCVFVLLK ATDDISFEVV  360
IFRAEESSKD SVGTTDNEVG TPGFPNSSSE KQEFGKQLPS TFNERVKSIE KDSSSEKQEF  420
RKQLPSTFVE RVKSIEKDAI ENENPFFKAV IQPSNKWYMR VPLEIADQYI TKDGDMALAI  480
PNGGQWPAQF KRRTSYATGK SAAVIYDGWN EFMTENDLEV GDVCIFELLN RTEVVFYVSI  540
VRVSDFSKQE RSQANNSPEV EKKKPKGDVR VKIETDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1424136625144B3 domain-containing transcription factor VRN1
4i1k_B1e-1424136625144B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY291e-170A0A2P5FY29_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-40B3 family protein