PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK28088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | RAV | ||||||||
Protein Properties | Length: 353aa MW: 39628.9 Da PI: 6.9911 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.7 | 2.8e-08 | 50 | 89 | 10 | 54 |
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++g W A+I+ + +r++lg+f +e+Aa a++ a+ +l+ PK28088.1 50 QQNGHWGAQIYA------NhQRIWLGTFKLEEDAAMAYDSAAIRLR 89 34788****999......44**********************9986 PP | |||||||
2 | B3 | 91.1 | 8.1e-29 | 167 | 267 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ g + ++++++ d s rsW+++++y+++s++yv+t+GW++Fvk+++Lk++D++ F+l PK28088.1 167 FQKELTPSDVGKLNRLVIPKKYAIKYlphiseedseekeslGDGTVDDMEVVFHDHSMRSWKFRYCYWRSSQSYVFTRGWSRFVKEKKLKANDTIAFYLC 266 99**************************99998876666664444599**************************************************86 PP S CS B3 86 g 86 + PK28088.1 267 E 267 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.30E-21 | 42 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-16 | 43 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.845 | 43 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-18 | 43 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-13 | 43 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-32 | 164 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-28 | 165 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-26 | 166 | 272 | No hit | No description |
Pfam | PF02362 | 3.4E-26 | 167 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 167 | 287 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-23 | 167 | 276 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEDVMSSIVL NGGLNVIPEA ANSNGSVHSL TPSKRAKTGS SAKYKGTVKQ QNGHWGAQIY 60 ANHQRIWLGT FKLEEDAAMA YDSAAIRLRC GDSHRNFPWT KATVEEPKFQ SHYTTENLLN 120 MIKDGSYQAK FEDFLRNTCL ENSEKAASLG LLGNANIGGL LFKQLLFQKE LTPSDVGKLN 180 RLVIPKKYAI KYLPHISEED SEEKESLGDG TVDDMEVVFH DHSMRSWKFR YCYWRSSQSY 240 VFTRGWSRFV KEKKLKANDT IAFYLCEQRN VLNEKDAFAM IEVVEDNDRL LINGAAKHSC 300 LRLNFDKCCK QVEVDKEGDG EVAMEEVGNE IPKAAAAAAA ANSGFRLFGV QIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-26 | 163 | 266 | 4 | 96 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-26 | 163 | 266 | 4 | 96 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024953690.1 | 1e-125 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_024953691.1 | 1e-125 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Refseq | XP_024953692.1 | 1e-125 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 1e-102 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A2P5F3D7 | 0.0 | A0A2P5F3D7_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_006473975.1 | 1e-125 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 2e-97 | RAV family protein |