PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK27986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 304aa MW: 34138.8 Da PI: 6.3945 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.9 | 2e-16 | 29 | 120 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +Li+a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + ss++ +fd+l+a PK27986.1 29 CWSEEATSTLIDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGALSSSWTFFDRLDA 120 7****************************************99999****************************99989999*******985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.5E-26 | 27 | 121 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MGDITESLTP SSATPVSSHS RPMPVREDCW SEEATSTLID AWGRRYLELN RGNLRQKDWQ 60 DVADAVNALH GHTKKTHRTD VQCKNRIDTI KKKYKVEKAR VSSSNGALSS SWTFFDRLDA 120 LIGSNQKKPS PSLSPSPPIA VPLHSSSSYR KNSSAATVAS SALVALRQKR PALSAAPEEG 180 FFRRNYSAMA AAAAAAEAEE DEDDLENEED VEEEEEVEKE RYSDDESVDG AGLRSLARAI 240 SRFGEVYEKV EAEKLRQMVE LEKKRMQFAK DLEVRRMRMF MDTQLQLERI KRGKRSGSND 300 IYGX |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293945.1 | 1e-133 | PREDICTED: trihelix transcription factor ASIL2-like isoform X1 | ||||
Refseq | XP_022925758.1 | 1e-134 | trihelix transcription factor ASIL1-like isoform X1 | ||||
TrEMBL | A0A2P5EP44 | 1e-137 | A0A2P5EP44_TREOI; Trihelix transcription factor (Fragment) | ||||
STRING | XP_004293944.1 | 1e-130 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58630.1 | 6e-43 | sequence-specific DNA binding transcription factors |