PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 26245.6 Da PI: 4.8526 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ PK27824.1 2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.292 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 6.39E-13 | 1 | 43 | No hit | No description |
SMART | SM00717 | 1.1E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.89E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQEK KKSTTTTTSN 60 SSSSSSSSSP PPDHDVSSPS QSSSSSNITT VESLPFPDST TGVESFYDTG GRVVSAYDNR 120 GHDKMKTEAK NHIEDEQQTA AAAVAGCYSM DDIWKEISLP EEGVYNCNNL TSTPLIAAAE 180 PSPPAWDEYY CSDSLWINNL DEEVSNKSRG FTQTTATAIN DPFNYACFDY GGAFLTG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112913.1 | 6e-56 | transcription factor MYB59 | ||||
TrEMBL | A0A2P5BUV3 | 1e-82 | A0A2P5BUV3_TREOI; MYB transcription factor | ||||
STRING | XP_010112913.1 | 2e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-33 | myb domain protein 48 |