PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK27683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 269aa MW: 30200.9 Da PI: 7.365 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.3 | 7.2e-14 | 131 | 169 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkk++Cl++YC Cfa g++C + C+Ce+C+Nk PK27683.1 131 SCKRCNCKKTECLNQYCVCFATGQYCLDPCNCENCFNKV 169 689**********************************96 PP | |||||||
2 | TCR | 24 | 7.7e-08 | 191 | 227 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCsee.CkCedCkNk 39 + gCnCk + C k+YC C +++ Cs e CkC C+N PK27683.1 191 RGGCNCK-TGCSKEYCICLKNKIGCSVEtCKCIACQNI 227 569***5.89***************9666********6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-10 | 130 | 171 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 21.28 | 131 | 229 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.1E-9 | 133 | 168 | IPR005172 | CRC domain |
SMART | SM01114 | 2.3E-5 | 189 | 230 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.5E-6 | 193 | 226 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
QDLALQNFGL PTTSKSIGPG SDFSLERKGL LDQSNAEWSE ILNFGESSTS LNGLDFNNNS 60 LNVWGEISYN YSFGDGITKI DEQNILSSQN QYHHSEKESY GLPISQQTYE VESTRQEMNF 120 EPRLKRQKFN SCKRCNCKKT ECLNQYCVCF ATGQYCLDPC NCENCFNKVA FSEKVEVARK 180 MSLLKASTKR RGGCNCKTGC SKEYCICLKN KIGCSVETCK CIACQNIFGQ RKGATKEGEL 240 QGSEPNMHFR FPIQQPLDNI ISSSSINDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-28 | TESMIN/TSO1-like CXC 2 |