PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 32980.3 Da PI: 9.993 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g PK27482.1 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 231 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.73E-35 | 181 | 241 | No hit | No description |
SMART | SM00380 | 9.8E-38 | 182 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 182 | 239 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 182 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-23 | 182 | 240 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 183 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
XAAMDFYSSR PIQSDPLRGE LMEALEPFMK SGSPTIQSPE FSSSSSSLYL PSTSSSSLYL 60 PSTSSSSSSY LSFSPSVQTQ PGFFQDCCST SNTQVFSNGF SNQNQNHLGF EQQQQQQQLG 120 LIGLNSLTPS QIHQIQAQIQ FQNHQQPQSH MGFQPSHHGL SFLGPKPIPM KQVGSPPKPT 180 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDRAAYKLR GDFARLNFPH 240 LRHQGSAEFG DFKPLHSSVD AKLQAICQNL AESQTQQGNK KKADKSTTTT AASKRSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 181 | 239 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092758.1 | 1e-108 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 5e-73 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2P5G1X3 | 1e-126 | A0A2P5G1X3_TREOI; AP2/ERF transcription factor | ||||
STRING | cassava4.1_023527m | 1e-103 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-47 | related to AP2 4 |
Publications ? help Back to Top | |||
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