PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 817aa MW: 92660.5 Da PI: 6.5907 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52 | 1.9e-16 | 169 | 246 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+++evlaL+ +r+ me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ ++++++ + s+ c +++l PK27436.1 169 WSEDEVLALLGIRSTMENWFPDF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESQYFTTTNNNSNCS-KSYSRLCNQLSEL 246 ********************998.....9*******************************9999888763.5555566655555 PP | |||||||
2 | trihelix | 92 | 6.3e-29 | 603 | 706 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++evlaLi++r ++ +++ ++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy PK27436.1 603 RWPRDEVLALINLRCNLYSTVTTATatgessstsdhhhhhhhhnHKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPY 701 8**************66666555433344455555666666666*********************************************8.78889**** PP trihelix 82 fdqle 86 f+ql PK27436.1 702 FHQLS 706 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.2E-11 | 167 | 235 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 168 | 220 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-4 | 601 | 680 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.9E-18 | 602 | 707 | No hit | No description |
CDD | cd12203 | 1.41E-23 | 602 | 686 | No hit | No description |
PROSITE profile | PS50090 | 5.877 | 603 | 679 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MFNGGVPDQL HQFIASSRPN SVAALLPLST TTTTNTTTTT TTPFSSSNSS IDHIIHANYT 60 TTITPNHAHE SHHHHHHNPF HHHQLLPPLH HPNNFLHPML HHVQHPKLIN HHLHKQIDEQ 120 ATASAASGPN NLVSHVDLEM MQTHTPIPEL IPTVDHHHHH HQLHLQQPWS EDEVLALLGI 180 RSTMENWFPD FTWEHVSRKL AELGFKRSAE KCKEKFEEES QYFTTTNNNS NCSKSYSRLC 240 NQLSELEELY HGQNNQGGHH QNQNHHNGTT AGDEKDHQSV EENPSDELEV MKRNGNNRQG 300 LELEELEISD STRNETVLLL GGNSKEYYSD EMTEKVVVSA VGGVEISKSG INNNNENNNN 360 KKKKKKKRKR SSSLQQHDDD GDGDDDGDGD GDDDGDDKKN HNSNKMMKFD MFKGFCEEIV 420 KKMMAQQEEM HNKLLEDMVK RDEEKVAIEE AWKKQEMDRM NKELEIMAHE QALAGDRQAS 480 IIDFLNKVTQ LTKLDNNNIS NNNNKDNVVS LTSSSSSSLN IPPPPPSNPN PTITHLEKNQ 540 TNHHHPHYDD KKPSSSSSNK DIVVVLSSST ATTPTNKPVA TSSAIKTVQN PISINDKEDL 600 GKRWPRDEVL ALINLRCNLY STVTTATATG ESSSTSDHHH HHHHHNHKAP LWERISQGML 660 ELGYKRSAKR CKEKWENINK YFRKTKDVNK KRSVDSRTCP YFHQLSSLYN KGSSSTTSTT 720 LVSTSFQQAQ NNNNINDNNN HDHRQDDHII ITMNNNGDHH SPITTTTTTP ADHHHHHNHG 780 EMSSLSDNNN IIIRDDHHQE EEEAVVVVAS TAFDFEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 369 | KKKKKKRKR |
2 | 363 | 368 | KKKKRK |
3 | 363 | 369 | KKKKRKR |
4 | 365 | 370 | KKRKRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5ENG7 | 0.0 | A0A2P5ENG7_TREOI; GAMYB transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 2e-40 | Trihelix family protein |