PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27404.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 377aa MW: 42506.6 Da PI: 10.2088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27404.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.1	5.7e-29	62	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeevs+k++ gf+rs+k+Ckek+en+ k++k++keg+ ++t+++ t+++fdql PK27404.1 62 RWPRQETLALLKIRQDMDAIFRDSSLKGPLWEEVSRKLAGLGFKRSAKKCKEKFENVYKYHKRTKEGRTGKTEGK--TYRFFDQLA 145 8******************************************************************986665..5****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.8E-4	59	121	IPR001005	SANT/Myb domain
Pfam	PF13837	1.1E-18	61	146	No hit	No description
CDD	cd12203	6.67E-23	61	126	No hit	No description
PROSITE profile	PS50090	7.004	61	119	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
XTTQDHVLEL RHQQGGSGED RNNNNNIVES NLSNNSAEEE NKLLFDESGG GGGGGDRSGG 60 NRWPRQETLA LLKIRQDMDA IFRDSSLKGP LWEEVSRKLA GLGFKRSAKK CKEKFENVYK 120 YHKRTKEGRT GKTEGKTYRF FDQLAAFEQN HHPPPPTPPP PPPQQPSKPQ VIVNNSPPPP 180 PWTTPPPITT VTYHQNPTKN NDSNNSNNIP LLSPLVVPLP PTPTPTNNTT MNNISTNNNN 240 NNNSLLFPPQ TKSINHLNTT TTATTTAVPT APTTGIDRHQ YLFSSSSTSS STASDEEFQA 300 RSSSRGQKRK RKWRDFFRKL TKEVIRKQEE MQKTFLETVE KSEQARIVRE DTWRLQEMAR 360 VNREHEILVQ ERSTAAX

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

XTTQDHVLEL RHQQGGSGED RNNNNNIVES NLSNNSAEEE NKLLFDESGG GGGGGDRSGG  60
NRWPRQETLA LLKIRQDMDA IFRDSSLKGP LWEEVSRKLA GLGFKRSAKK CKEKFENVYK  120
YHKRTKEGRT GKTEGKTYRF FDQLAAFEQN HHPPPPTPPP PPPQQPSKPQ VIVNNSPPPP  180
PWTTPPPITT VTYHQNPTKN NDSNNSNNIP LLSPLVVPLP PTPTPTNNTT MNNISTNNNN  240
NNNSLLFPPQ TKSINHLNTT TTATTTAVPT APTTGIDRHQ YLFSSSSTSS STASDEEFQA  300
RSSSRGQKRK RKWRDFFRKL TKEVIRKQEE MQKTFLETVE KSEQARIVRE DTWRLQEMAR  360
VNREHEILVQ ERSTAAX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	112	KRSAKKCKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002532428.1	2e-93	trihelix transcription factor GT-2
Refseq	XP_010108641.1	1e-93	trihelix transcription factor GT-2
TrEMBL	A0A2P5DSH1	1e-106	A0A2P5DSH1_PARAD; GAMYB transcription factor
STRING	XP_002532428.1	7e-93	(Ricinus communis)
STRING	XP_010108641.1	4e-93	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-45	Trihelix family protein