PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK27196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 104aa MW: 12111 Da PI: 7.0382 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.7e-13 | 6 | 95 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ffk+l +++ +++lp kf++ h + +++ + + +W++ l +++ +l++GW eFvk +L g + F+++g+s+f ++ +++k PK27196.1 6 FFKIL---TDHSLTQMRLPQKFVRLHRET--LASSVSVVLPCSHTWKLGL--VVEDDKLYLKEGWPEFVKHYQLAYGHLLDFTYVGSSNF--NIAIYDK 95 77888...33444569********99755..44469999999********..999999****************************9999..7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.434 | 3 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-19 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.13E-11 | 4 | 94 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-17 | 5 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.8E-10 | 6 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-10 | 6 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MTSFCFFKIL TDHSLTQMRL PQKFVRLHRE TLASSVSVVL PCSHTWKLGL VVEDDKLYLK 60 EGWPEFVKHY QLAYGHLLDF TYVGSSNFNI AIYDKTTCEI DYSP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5F347 | 9e-26 | A0A2P5F347_TREOI; B3 DNA binding domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-20 | B3 family protein |