PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27147.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Nin-like

Protein Properties

Length: 895aa MW: 100264 Da PI: 5.7343

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27147.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.8e-29	586	637	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++ PK27147.1 586 AEKTITLQVLRQYFAGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 637 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-25	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.7E-20	820	894	No hit	No description
PROSITE profile	PS50057	9.209	826	895	IPR000299	FERM domain
SMART	SM00666	6.5E-16	827	894	IPR000270	PB1 domain
PROSITE profile	PS51745	23.045	827	895	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.8E-21	828	894	No hit	No description
CDD	cd06407	9.90E-35	829	894	No hit	No description
Pfam	PF00564	1.3E-17	829	893	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005856	Cellular Component	cytoskeleton
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MEEGVLSPST ILGAPSEYPM DLDFMDELFL EGCWLETRDG SEYISQTSSS NPLFDPLFWP 60 TLETNGDLNA NPSQRSNQEG RQKSIFNESV GVSVLRALPP SQTINNAPNN PGVSEGLITE 120 NDEMRRKNWI GTKESQGPSS FVMEKLCRAL MYIKDVIRDK DILVQIWIPV DKEGRRVLTT 180 RDLPFALDDS CPKLARYRDI SVKYQFPAEE DSKGLIMGLP GRVFSGKVPE WTPDVRYFRN 240 DEYPRLMHAY QYDVRGTLAL PIFEQGSRIC LGVVEVIMTT QKIKYRPELE SVCKALEAVN 300 LKSSEVLSTH NVFNKYYQAA LPEIQQVLKS ACDTHRLPLA QTWVPCIYQA KEGCRHSDEN 360 YVQCVSTVDH ACYVADPHIQ GFHEACSEHH LLRGQGVVGG AFMTNQPCFS ADITLYPKTE 420 YPLSHHAMLF ELHAAVAIRL RSIHTGAADF VLEFFLPKDC TDPEEQKKML TSLSLIIQQC 480 CQSLRVVTEK ELEEEGDFQA NKVLTPSIDR PDTEICFQEV QQNETDLSLF TVEKTSDGRH 540 SKSSQNQRGS SLKPSDEYVE ECSTVGEGSF SNLGGVKTGE RRRTKAEKTI TLQVLRQYFA 600 GSLKDAAKSI GVCSTTLKRI CRQHGIKRWP SRKIKKVGHS LQKLQLVIDS VQGASGAFQI 660 DSFYSNFPEL ASPNVSGTSP FSTSKANDHP TPSCLQQPGE GSGGMYSAQA TTAAAAATSK 720 SSSTYSQSSS SSQCCSSRSQ QHPQTWNNMV TSSEDANGGE NSGDDVVLKR VRSEAELFAS 780 HEVDNNNLLP RSQSHISLME HRKSLKSGFP PSSVKNERRL TQQEGELQRV KVTYGEEKTR 840 FRIHNNWGFT DLQQEVGRRF GIQDMTTFTI KYLDDDSEWV LLTCDADLEE CFEVW

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MEEGVLSPST ILGAPSEYPM DLDFMDELFL EGCWLETRDG SEYISQTSSS NPLFDPLFWP  60
TLETNGDLNA NPSQRSNQEG RQKSIFNESV GVSVLRALPP SQTINNAPNN PGVSEGLITE  120
NDEMRRKNWI GTKESQGPSS FVMEKLCRAL MYIKDVIRDK DILVQIWIPV DKEGRRVLTT  180
RDLPFALDDS CPKLARYRDI SVKYQFPAEE DSKGLIMGLP GRVFSGKVPE WTPDVRYFRN  240
DEYPRLMHAY QYDVRGTLAL PIFEQGSRIC LGVVEVIMTT QKIKYRPELE SVCKALEAVN  300
LKSSEVLSTH NVFNKYYQAA LPEIQQVLKS ACDTHRLPLA QTWVPCIYQA KEGCRHSDEN  360
YVQCVSTVDH ACYVADPHIQ GFHEACSEHH LLRGQGVVGG AFMTNQPCFS ADITLYPKTE  420
YPLSHHAMLF ELHAAVAIRL RSIHTGAADF VLEFFLPKDC TDPEEQKKML TSLSLIIQQC  480
CQSLRVVTEK ELEEEGDFQA NKVLTPSIDR PDTEICFQEV QQNETDLSLF TVEKTSDGRH  540
SKSSQNQRGS SLKPSDEYVE ECSTVGEGSF SNLGGVKTGE RRRTKAEKTI TLQVLRQYFA  600
GSLKDAAKSI GVCSTTLKRI CRQHGIKRWP SRKIKKVGHS LQKLQLVIDS VQGASGAFQI  660
DSFYSNFPEL ASPNVSGTSP FSTSKANDHP TPSCLQQPGE GSGGMYSAQA TTAAAAATSK  720
SSSTYSQSSS SSQCCSSRSQ QHPQTWNNMV TSSEDANGGE NSGDDVVLKR VRSEAELFAS  780
HEVDNNNLLP RSQSHISLME HRKSLKSGFP PSSVKNERRL TQQEGELQRV KVTYGEEKTR  840
FRIHNNWGFT DLQQEVGRRF GIQDMTTFTI KYLDDDSEWV LLTCDADLEE CFEVW

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020072.1	0.0	protein NLP4-like
TrEMBL	A0A221I0P5	0.0	A0A221I0P5_TREOI; NIN-like transcription factor
STRING	XP_008237985.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein