PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 113aa MW: 12847.6 Da PI: 11.359 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.9 | 6.1e-30 | 1 | 51 | 5 | 55 |
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rWtp LH++Fv+ave+LGG e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ PK26966.1 1 RWTPGLHRAFVHAVERLGGLERATPKLVLQLMSVKGLSIAHVKSHLQMYRS 51 7*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 6.6E-7 | 1 | 50 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.278 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-13 | 1 | 52 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-22 | 1 | 53 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.2E-27 | 1 | 52 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
RWTPGLHRAF VHAVERLGGL ERATPKLVLQ LMSVKGLSIA HVKSHLQMYR SKKLDESGQV 60 LSHRNMGMQR DHIIQMCQRF SPYGGKFTMD NRSYSTATSS TSTFKHPITS SRX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-19 | 1 | 53 | 5 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 1 | 53 | 5 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 1 | 53 | 5 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 1 | 53 | 5 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 1 | 53 | 6 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657046.1 | 1e-40 | PREDICTED: uncharacterized protein LOC104880828 | ||||
TrEMBL | A0A2P5FFB9 | 1e-45 | A0A2P5FFB9_TREOI; Octamer-binding transcription factor | ||||
STRING | VIT_12s0028g02080.t01 | 3e-42 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 8e-29 | G2-like family protein |