PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26896.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24164.2 Da    PI: 9.3014
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26896.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.74.1e-251056248
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               rien   rqvtf+kRr+g+lKKA+ELSvLCdae+ ++ifs +gkly+
  PK26896.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYD 56
               8********************************************97 PP
2K-box61.43.5e-21901819100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ++++++   ++e++ Lk+eie Lq+ +R + G + ++++l eLq Le++Le  + +iRs K++++ ++i+ l++ke  l+ +nk+L+ k+ee
  PK26896.1  90 QTQSDQLDAKNEISMLKQEIEILQKGLRYMFGGGAGTMNLDELQILEKNLELWIYHIRSAKMDIMSQEIQLLKNKEGILKAANKYLQDKIEE 181
                6677778899*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-27175IPR002100Transcription factor, MADS-box
CDDcd002651.19E-39278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2292179IPR002487Transcription factor, K-box
PROSITE profilePS5129712.92695185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLVIFSA HGKLYDLATK  60
GTMQGLIEKY MKSTKGSLVA QADQQQPILQ TQSDQLDAKN EISMLKQEIE ILQKGLRYMF  120
GGGAGTMNLD ELQILEKNLE LWIYHIRSAK MDIMSQEIQL LKNKEGILKA ANKYLQDKIE  180
ENTTTASDLD FVPMMTTNNP YPLTILQNGI FQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15170169MEF2C
5f28_B1e-15170169MEF2C
5f28_C1e-15170169MEF2C
5f28_D1e-15170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023771.11e-120agamous-like MADS-box protein AGL12
SwissprotQ388417e-87AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2P5CFE81e-123A0A2P5CFE8_TREOI; MADS-box transcription factor
STRINGXP_002526423.11e-107(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-89AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]