PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26828.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 338aa    MW: 37750.9 Da    PI: 4.6469
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26828.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-092793122255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yp+++++ +LA+ +gL+++q+ +WF N+R ++
  PK26828.1 279 WPYPTETDKIQLAELTGLDQKQINNWFINQRKRH 312
                69*****************************885 PP

2ELK34.25.6e-12232253122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK+ LlrKYsgy+++Lk EFs
  PK26828.1 232 ELKEKLLRKYSGYISTLKLEFS 253
                9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.5E-2381125IPR005540KNOX1
PfamPF037901.2E-2183124IPR005540KNOX1
SMARTSM012561.1E-22129180IPR005541KNOX2
PfamPF037912.6E-23134178IPR005541KNOX2
SMARTSM011881.0E-6232253IPR005539ELK domain
PROSITE profilePS5121310.65232252IPR005539ELK domain
PfamPF037891.9E-9232253IPR005539ELK domain
PROSITE profilePS5007112.6252315IPR001356Homeobox domain
SuperFamilySSF466893.17E-19253327IPR009057Homeodomain-like
SMARTSM003891.6E-10254319IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-27257316IPR009057Homeodomain-like
PfamPF059202.6E-16272311IPR008422Homeobox KN domain
CDDcd000861.70E-11278315No hitNo description
PROSITE patternPS000270290313IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDNDLYNLGG YSEQSSMAPP HGMVSPVADD YNLLNSTTTT TGFDDHDRVH HAFGSDSIFP  60
APPSADSDAA SMAPTSDDFS SEIRAKIASH PLYPKLLEAY IDCRKVGAPP ELASSLDEIR  120
RESEVVTTVS TFVVSDPELD EFMESYCDIL VKYKSDLSRP FDEATSFLNE MQAQLNSLSC  180
STSTTTTSTS YVSDAEGGGG SSEEEEEHEV SGGGGGGGEM EGLRMITQED RELKEKLLRK  240
YSGYISTLKL EFSKKKKKGK LPKQARQTLL DWWTLHYRWP YPTETDKIQL AELTGLDQKQ  300
INNWFINQRK RHWKPPENMQ VAMMEAHSIY ASSICHNQ
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024929478.11e-118homeobox protein knotted-1-like 6
SwissprotQ84JS61e-103KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2P5DG041e-152A0A2P5DG04_PARAD; Octamer-binding transcription factor
STRINGVIT_17s0000g08710.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]