PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TALE | ||||||||
Protein Properties | Length: 338aa MW: 37750.9 Da PI: 4.6469 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 279 | 312 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ +LA+ +gL+++q+ +WF N+R ++ PK26828.1 279 WPYPTETDKIQLAELTGLDQKQINNWFINQRKRH 312 69*****************************885 PP | |||||||
2 | ELK | 34.2 | 5.6e-12 | 232 | 253 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKYsgy+++Lk EFs PK26828.1 232 ELKEKLLRKYSGYISTLKLEFS 253 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.5E-23 | 81 | 125 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-21 | 83 | 124 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-22 | 129 | 180 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.6E-23 | 134 | 178 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.0E-6 | 232 | 253 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.65 | 232 | 252 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.9E-9 | 232 | 253 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.6 | 252 | 315 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.17E-19 | 253 | 327 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-10 | 254 | 319 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-27 | 257 | 316 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-16 | 272 | 311 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 1.70E-11 | 278 | 315 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 290 | 313 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MDNDLYNLGG YSEQSSMAPP HGMVSPVADD YNLLNSTTTT TGFDDHDRVH HAFGSDSIFP 60 APPSADSDAA SMAPTSDDFS SEIRAKIASH PLYPKLLEAY IDCRKVGAPP ELASSLDEIR 120 RESEVVTTVS TFVVSDPELD EFMESYCDIL VKYKSDLSRP FDEATSFLNE MQAQLNSLSC 180 STSTTTTSTS YVSDAEGGGG SSEEEEEHEV SGGGGGGGEM EGLRMITQED RELKEKLLRK 240 YSGYISTLKL EFSKKKKKGK LPKQARQTLL DWWTLHYRWP YPTETDKIQL AELTGLDQKQ 300 INNWFINQRK RHWKPPENMQ VAMMEAHSIY ASSICHNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024929478.1 | 1e-118 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-103 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2P5DG04 | 1e-152 | A0A2P5DG04_PARAD; Octamer-binding transcription factor | ||||
STRING | VIT_17s0000g08710.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-78 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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