PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 556aa MW: 63783.3 Da PI: 7.4424 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.7 | 3.8e-29 | 96 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ r++++++k+plW+++s+ m +e+g++rs k+Ckek+enl k+ykk+keg+ ++ ++ +++++f+qlea PK26797.1 96 RWPRQETLTLLEIRSRLNPRFKDTNQKGPLWDQISRIMaEEHGYQRSGKKCKEKFENLYKYYKKTKEGKARK--QDGKHYRFFRQLEA 181 8*************************************999*****************************96..66778*******85 PP | |||||||
2 | trihelix | 43.3 | 9.6e-14 | 376 | 458 | 2 | 70 |
trihelix 2 Wt.kqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+ Lie++r+ ++++++ + Wee+++km+ gfersp +Ck+kwe+l+ + ++ + +++ PK26797.1 376 WNnEEEISSLIELVRSSSSSSSTSTnfnclelgttssnNTSTVWEEIASKMSCLGFERSPSECKHKWESLSIYTNNESHKKRR 458 651579*********99999998744556666666666999*****************************9876555555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.097 | 89 | 154 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.03 | 93 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.05E-20 | 96 | 161 | No hit | No description |
Pfam | PF13837 | 1.4E-19 | 96 | 182 | No hit | No description |
SMART | SM00717 | 1.7 | 372 | 448 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.33 | 378 | 446 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.4E-10 | 378 | 457 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
XPLISPAHHL GEAPYTVHSS NYQQQYSYGQ TSSLCGVGLV EHQFGSGQHI NMSGSNGVAL 60 YHDLESSSGT GGLWMSSSNT NNNMGNYDNN TMNTTRWPRQ ETLTLLEIRS RLNPRFKDTN 120 QKGPLWDQIS RIMAEEHGYQ RSGKKCKEKF ENLYKYYKKT KEGKARKQDG KHYRFFRQLE 180 AIYGHDQNSN IDQSPLLVDQ THHIIRPNSL LYQYPNKISD HNSLNSFSIN NSSDQFETSS 240 SDNNMNNKDE DQKMKGVGEI RGKKKSSWKA KVEEFVDSQM KKIMVTQESW MEKMFKNVID 300 KQEKRVAEEE ECRKKEVARV DEKINEFWAK EKAWIEARDA AVMGAFNKLT DGKGSSLLQL 360 PSFPERSSNS SNIVRWNNEE EISSLIELVR SSSSSSSTST NFNCLELGTT SSNNTSTVWE 420 EIASKMSCLG FERSPSECKH KWESLSIYTN NESHKKRREE FNTTGRYSGN NNNNNQDYYN 480 NHCELALMKQ DDQRDHRIIT GLRLMDDTTN TSNVAAGTSH MNNPTNCFNL LFGEEENLWE 540 KYGSLKLGNK DRLNQL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110171.2 | 1e-144 | trihelix transcription factor PTL | ||||
TrEMBL | A0A2P5EHX2 | 1e-176 | A0A2P5EHX2_TREOI; TFIIB transcription factor | ||||
STRING | XP_010110171.1 | 1e-144 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 2e-87 | Trihelix family protein |