PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26797.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 556aa    MW: 63783.3 Da    PI: 7.4424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26797.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.8e-2996181187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+l+L+e+r++++ r++++++k+plW+++s+ m +e+g++rs k+Ckek+enl k+ykk+keg+ ++  ++ +++++f+qlea
  PK26797.1  96 RWPRQETLTLLEIRSRLNPRFKDTNQKGPLWDQISRIMaEEHGYQRSGKKCKEKFENLYKYYKKTKEGKARK--QDGKHYRFFRQLEA 181
                8*************************************999*****************************96..66778*******85 PP

2trihelix43.39.6e-14376458270
   trihelix   2 Wt.kqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                W  ++e+  Lie++r+  ++++++                 + Wee+++km+  gfersp +Ck+kwe+l+ +  ++ + +++
  PK26797.1 376 WNnEEEISSLIELVRSSSSSSSTSTnfnclelgttssnNTSTVWEEIASKMSCLGFERSPSECKHKWESLSIYTNNESHKKRR 458
                651579*********99999998744556666666666999*****************************9876555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.09789154IPR017877Myb-like domain
SMARTSM007170.0393156IPR001005SANT/Myb domain
CDDcd122034.05E-2096161No hitNo description
PfamPF138371.4E-1996182No hitNo description
SMARTSM007171.7372448IPR001005SANT/Myb domain
PROSITE profilePS500906.33378446IPR017877Myb-like domain
PfamPF138373.4E-10378457No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
XPLISPAHHL GEAPYTVHSS NYQQQYSYGQ TSSLCGVGLV EHQFGSGQHI NMSGSNGVAL  60
YHDLESSSGT GGLWMSSSNT NNNMGNYDNN TMNTTRWPRQ ETLTLLEIRS RLNPRFKDTN  120
QKGPLWDQIS RIMAEEHGYQ RSGKKCKEKF ENLYKYYKKT KEGKARKQDG KHYRFFRQLE  180
AIYGHDQNSN IDQSPLLVDQ THHIIRPNSL LYQYPNKISD HNSLNSFSIN NSSDQFETSS  240
SDNNMNNKDE DQKMKGVGEI RGKKKSSWKA KVEEFVDSQM KKIMVTQESW MEKMFKNVID  300
KQEKRVAEEE ECRKKEVARV DEKINEFWAK EKAWIEARDA AVMGAFNKLT DGKGSSLLQL  360
PSFPERSSNS SNIVRWNNEE EISSLIELVR SSSSSSSTST NFNCLELGTT SSNNTSTVWE  420
EIASKMSCLG FERSPSECKH KWESLSIYTN NESHKKRREE FNTTGRYSGN NNNNNQDYYN  480
NHCELALMKQ DDQRDHRIIT GLRLMDDTTN TSNVAAGTSH MNNPTNCFNL LFGEEENLWE  540
KYGSLKLGNK DRLNQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110171.21e-144trihelix transcription factor PTL
TrEMBLA0A2P5EHX21e-176A0A2P5EHX2_TREOI; TFIIB transcription factor
STRINGXP_010110171.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-87Trihelix family protein