PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26778.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24809.9 Da    PI: 4.6067
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26778.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.76.1e-081223051
               HHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 30 LCdaevaviifsstgklyeyss 51
               LCda++ +iifs +gklye++s
  PK26778.1  1 LCDAQIGLIIFSANGKLYEFCS 22
               9*******************96 PP
2K-box59.71.2e-2035128294
      K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                q ++g++  e+++ e+++ e++++ +e++nLq ++ +++GedL+sLsl eL++Le+ Le+s  kiR++K e+l +q+e+l +ke+ l ++n+ +
  PK26778.1  35 QLATGTQiMEQNDIEQMHGEMRRIMSETRNLQLSLQRYIGEDLSSLSLGELNELEHVLEHSSHKIRTRKFEILQQQMENLERKEQLLGQDNEHM 128
                55666777889999***************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003196.8E-5120IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-9143IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.526124IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1843128IPR002487Transcription factor, K-box
PROSITE profilePS5129714.31748138IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
LCDAQIGLII FSANGKLYEF CSDPLSMENI IQKYQLATGT QIMEQNDIEQ MHGEMRRIMS  60
ETRNLQLSLQ RYIGEDLSSL SLGELNELEH VLEHSSHKIR TRKFEILQQQ MENLERKEQL  120
LGQDNEHMFH LLKEQQAAAT TYEEQNEVVN VRKIEEVERM GGMSHILDQF PFGGEDQPSS  180
VLQLTTLHQT ATPNNFYPYR LLPTQPNLQD YALN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030137.14e-78MADS-box protein defh21
TrEMBLA0A2P5BJY53e-94A0A2P5BJY5_PARAD; MADS-box transcription factor
STRINGXP_010109853.17e-71(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-32MIKC_MADS family protein