PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26775.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 334aa    MW: 37733.8 Da    PI: 8.9397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26775.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-06105127123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  PK26775.1 105 FVCEICNKGFQRDQNLQLHRRGH 127
                89*******************88 PP
2zf-C2H213.40.00023182204123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  PK26775.1 182 WKCEKCSKKYAVQSDWKAHSKTC 204
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-5104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.23E-7104127No hitNo description
SMARTSM003550.017105127IPR015880Zinc finger, C2H2-like
PfamPF121714.9E-5105127IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM00355290147177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4170203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.23E-7177202No hitNo description
SMARTSM00355140182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSIITGCEDH GGRSSFSSGN FGRESGAGVE KEEVLENLNN NNNNNNNGSN SFSSTTTSNG  60
SSTHQVLEQP SPLANKKKRN PPGNPDPSAE VIALSPNTLL ARNRFVCEIC NKGFQRDQNL  120
QLHRRGHNLP WKLRQRSPNE VIRKRVYICP ETSCVHHNPT RALGDLTGIK KHFCRKHGEK  180
KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CECGTIFSRR DSFITHRAFC DAIAEENNKT  240
TTNTLQRQNI NMSSSNQPEL MSSIISSTIN EENELKYAIP QPETTSPSDH HHHNHQFKHM  300
IMMNMKTPLI LDHHQSLNND NNNNNMAAGT FFSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35178242367Zinc finger protein JACKDAW
5b3h_F7e-35178242367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030476.11e-131protein indeterminate-domain 7
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2P5CFT01e-138A0A2P5CFT0_PARAD; TFIIH C1-like domain containing protein
STRINGXP_010088951.11e-129(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-96indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]