PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26613.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 511aa    MW: 58626.1 Da    PI: 6.0831
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26613.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.13.8e-3151135187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e+gf+rs+k+Ckek+en+ k++k++++g++++++++   +++f+qlea
  PK26613.1  51 RWPRQETLALLDIRSDMDAKFRDSSIKAPLWEEVSRKMSEHGFNRSAKKCKEKFENIYKYHKRTRDGRSGKSNGKA--YRFFEQLEA 135
                8********************************************************************9866665..*******85 PP

2trihelix105.83e-33346431187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k+ev aLi++r++++++++++  k+plWe++s++mr+ g++rs+k+Ckekwen+nk++k++k+++k+r  e+s+tcpyf+ql+a
  PK26613.1 346 RWPKDEVDALIRLRTNLDTQYQDNGPKGPLWEDISAAMRKLGYNRSSKRCKEKWENINKYFKRVKDSNKRR-VEDSKTCPYFHQLDA 431
                8********************************************************************98.78889********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01348110IPR001005SANT/Myb domain
PfamPF138371.6E-2050136No hitNo description
PROSITE profilePS500906.96950108IPR017877Myb-like domain
CDDcd122031.82E-2450115No hitNo description
Gene3DG3DSA:1.10.10.609.9E-5342402IPR009057Homeodomain-like
SMARTSM007177.0E-4343405IPR001005SANT/Myb domain
PfamPF138371.7E-22345432No hitNo description
PROSITE profilePS500907.642345403IPR017877Myb-like domain
CDDcd122032.99E-24345410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MLENSTLPEN LTATNPENGE VGGSSELAPV GLGEEERVGA EDGDRNWLGN RWPRQETLAL  60
LDIRSDMDAK FRDSSIKAPL WEEVSRKMSE HGFNRSAKKC KEKFENIYKY HKRTRDGRSG  120
KSNGKAYRFF EQLEALDHHS FDHPFPPSGD QVNTSLGESK TTAGTTRTSP SNVVINAIPC  180
SVHKPASNLG DSSPSNISSS SEESKGMRKE KKRLTQFFER LMKEVTDSQE KLQRKFIETL  240
EKCEQDRLAR EEVWKKQELE RIKRESDLLV QERSIAAAKD AAVLAFLKKF SEQTEPFQFP  300
EYPIVSVEKD VDKQEKNHSG NDEQTCLDNQ EKFNNNKKFV QVSSSRWPKD EVDALIRLRT  360
NLDTQYQDNG PKGPLWEDIS AAMRKLGYNR SSKRCKEKWE NINKYFKRVK DSNKRRVEDS  420
KTCPYFHQLD ALYNKKTKKV DDPENTGYDM RPEELLMHMM GGQEQQQQPA EPATENCESE  480
NLSQNHEGDN EIVDKDGYKD TANPSSMEIM G
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098893.10.0trihelix transcription factor GT-2
SwissprotQ391175e-99TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2P5ED760.0A0A2P5ED76_TREOI; TFIIB transcription factor
STRINGXP_010098893.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-122Trihelix family protein