PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26554.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRF | ||||||||
Protein Properties | Length: 480aa MW: 53278.4 Da PI: 7.2516 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.5 | 1.2e-23 | 248 | 291 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCsr+v++++k+CErH h++r rsrk++e PK26554.1 248 DQEPWRCRRTDGKKWRCSRNVIPDQKYCERHSHKSRPRSRKHVE 291 68****************************************97 PP | |||||||
2 | QLQ | 47.2 | 6.6e-17 | 185 | 216 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FTa+Q q+L++Q +++Ky++a+ P+P++Ll PK26554.1 185 PFTADQRQELERQTMIFKYMMASIPIPHQLLS 216 8*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.2E-8 | 184 | 220 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-11 | 185 | 215 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.766 | 185 | 220 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.788 | 248 | 292 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-19 | 250 | 291 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MGTRIGFVAS EKGAEKECDV GLGLRMQTND TKSFSSRRKM MMMMTTTTTI PHHHTHQNHH 60 NHNSNEDEDG GDDDIVVDDE SSLYNNRAFV EESCNLGSGG GGGGTGGSAS GCGGGGGEND 120 STTGPKLFCN TSNQVVSMAN IYNNIVGLGS SDSLPKTLLI PNSESFYNNP SSGGGIMVNG 180 NMRFPFTADQ RQELERQTMI FKYMMASIPI PHQLLSSSSP KTIPPSNFAY FHSSNRGLEL 240 GMSNNNSDQE PWRCRRTDGK KWRCSRNVIP DQKYCERHSH KSRPRSRKHV ELQSHFLNNN 300 NNNTKNPYSK PESLDQQRKT HQHQHQSHDN QPRSMEWFMN SNQEWQHMIH QQQQTKQGLN 360 DQFSLLLDSS STDNQSSKTR HFIDAWSIAD ERDQLRFSNS SSSSSSSSSS LALSIHNSNN 420 NNEVVVSQNA QMSYNPILGS GMMMINNNNN NQVSWSGSVP HGGPLAEALC LGMPHQNSSK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5DJT0 | 1e-100 | A0A2P5DJT0_PARAD; Growth-regulating factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13894 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-26 | growth-regulating factor 2 |