PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26523.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 199aa    MW: 22558.4 Da    PI: 6.4228
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26523.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-3254107255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  PK26523.1  54 PRLRWTPDLHLCFVRAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 107
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.78950110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3050108IPR009057Homeodomain-like
SuperFamilySSF466891.33E-1551108IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-2354109IPR006447Myb domain, plants
PfamPF002491.2E-955106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
EEEEDEDEDE DEDNEDRKNE QSSSNSTVEE NGSKKQQGAT SGGSVRQYVR SKTPRLRWTP  60
DLHLCFVRAV ERLGGQDRAT PKLVLQLMNI KGLSIAHVKS HLQMYRSKKI EDPNQEQGFF  120
LEAGREHHHH IYNLSQLPML QSFNQWPNSS LIRSSYGDSS WRSSSGRDHQ IYNNNNSVRA  180
ALDSANNRSS SSSSSVHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1855109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1855109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1855109357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1855109357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877428.11e-76putative Myb family transcription factor At1g14600
TrEMBLA0A2P5BAD63e-89A0A2P5BAD6_TREOI; Octamer-binding transcription factor
STRINGXP_010105426.11e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.14e-55G2-like family protein