PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26326.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NF-YA

Protein Properties

Length: 398aa MW: 43667.2 Da PI: 8.8194

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26326.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.6	2.7e-30	153	210	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak++ e+k k+rkpy+heSRh hA+rRpRg+gGrF PK26326.1 153 DGPIYVNAKQYHGIIRRRQSRAKAAVlESKP-PKARKPYMHESRHLHAMRRPRGCGGRF 210 57********************9867787.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.8E-33	151	213	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.997	152	213	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.2E-23	155	177	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.3E-26	155	210	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.2E-23	187	210	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MAMQTIYFKE HEGLVPNTIG HLSSISSLPW WSAYGSQSVF GDSCGQLKPL SMEKPGTGEL 60 LFSTKHEGRA TDFAPDKGNT NQFTISPGDG QKSQGTISLQ PSVPEYHARF ELGFGQPVVC 120 AKYPYMDQFC GLLSYGHQLS GRIMLPLNIT ADDGPIYVNA KQYHGIIRRR QSRAKAAVLE 180 SKPPKARKPY MHESRHLHAM RRPRGCGGRF LNTRIQKNEK GASPVAMKRR NGQQLSRSSR 240 SQSSDVLHSD SGTLNSSKEA NNSSGSNLSG SEVTSVYSRV ELEHFQLNLL GSPFHSVSEM 300 LETSRGIVMP TTWIAAADQA AATSMFDNKR KMGFDADEAY IPHFLFAAIM EKPVASSFLV 360 MVSATQVFGS EDGLPTHLTA SENGNSFLAH VDFHSELT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MAMQTIYFKE HEGLVPNTIG HLSSISSLPW WSAYGSQSVF GDSCGQLKPL SMEKPGTGEL  60
LFSTKHEGRA TDFAPDKGNT NQFTISPGDG QKSQGTISLQ PSVPEYHARF ELGFGQPVVC  120
AKYPYMDQFC GLLSYGHQLS GRIMLPLNIT ADDGPIYVNA KQYHGIIRRR QSRAKAAVLE  180
SKPPKARKPY MHESRHLHAM RRPRGCGGRF LNTRIQKNEK GASPVAMKRR NGQQLSRSSR  240
SQSSDVLHSD SGTLNSSKEA NNSSGSNLSG SEVTSVYSRV ELEHFQLNLL GSPFHSVSEM  300
LETSRGIVMP TTWIAAADQA AATSMFDNKR KMGFDADEAY IPHFLFAAIM EKPVASSFLV  360
MVSATQVFGS EDGLPTHLTA SENGNSFLAH VDFHSELT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-16	153	211	2	60	HAPB protein
4g92_A	2e-16	153	211	2	60	HAPB protein
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900395.1	1e-163	nuclear transcription factor Y subunit A-10-like
Refseq	XP_024922883.1	1e-163	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A2P5AU49	1e-180	A0A2P5AU49_TREOI; Nuclear transcription factor Y subunit A
STRING	XP_008387119.1	1e-138	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	4e-48	nuclear factor Y, subunit A10