PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK26305.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 694aa MW: 77083.6 Da PI: 5.3017

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK26305.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	420.9	1e-128	307	679	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL++c+ea+ s++ +++++++a+l +lasp+g+p+ R++ay+teALa r++r +++++++ pp+e + + +++ +al+++++v+Pi+kf h+t N+ PK26305.1 307 LSLLTSCVEAIGSKSIHAINHFIAKLGDLASPKGTPISRVTAYYTEALALRVTRLWPQMFHITPPREFE-RVDEDSGSALRFLNQVTPIPKFLHFTSNEV 405 689***************************************************************8.5567778999**************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 +++a+e ++rvHiiDfdi qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+vk++E+ PK26305.1 406 LMRAFEDKDRVHIIDFDIRQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHVKEHES 500 ********************************************....***********************.7*************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvac 300 +aVn+++qlh++l +s +++L l++s++P+vvv++eqea+hn++++ +r++++l++ysa+fds+ ++ lp +s +rikvE++ ++rei+n+va PK26305.1 501 VAVNCIFQLHKTLYDSSGGVL--RDFLGLIRSTNPTVVVMAEQEAEHNDPRLEARVCNSLKFYSAIFDSIdASLLPMDSPARIKVEEM-FAREIRNIVAG 597 *******9976655544..79*****************************************556689999*****.******* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.......sgslvlgWkdrpLvsvSaWr 374 eg +r erhe++e+Wr+ +e+ GF++ +++e++ +q ++llr+++ ++ y+v+e+ g ++lgW+d+pL++vSaW+ PK26305.1 598 EGMDRLERHENFETWRKLMEQGGFRSTRIGERELMQNRMLLRMYScDEDYSVKEQgrdneagVGGVTLGWQDQPLFTVSAWT 679 *****************************************999988888777778899************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.216	280	651	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-126	307	679	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF PMSTQRLDLP CSFSRKDSSR AQPIRPVTSL 60 SVEKPIESKT SSCSLKQSIR LPPLATTAPA SSAAGQTTFG EGRKDIKEEF WPRGKSLKRF 120 AEQGSVDESF INRAKRKRGI SDDRGETNEV VLEDEEERLS LGQLGAGNFW LQPGFNPHLP 180 FSLTCSGDEE EERRVCYVPG GEVISPPLPL SNNPWIDSVV TEITDLGEKG GETSRHVLPR 240 KEGSAAASSA SSGSQSQSLV PRINEGVPDY DVGNGSRNPH SHGGSEVVEV GEEDLINQEV 300 SEGFELLSLL TSCVEAIGSK SIHAINHFIA KLGDLASPKG TPISRVTAYY TEALALRVTR 360 LWPQMFHITP PREFERVDED SGSALRFLNQ VTPIPKFLHF TSNEVLMRAF EDKDRVHIID 420 FDIRQGLQWP SLFQSLASRT NPPSHVRITG IGESKQELNE TGDRLAGFAE ALNLPFEFHP 480 VVDRLEDVRL WMLHVKEHES VAVNCIFQLH KTLYDSSGGV LRDFLGLIRS TNPTVVVMAE 540 QEAEHNDPRL EARVCNSLKF YSAIFDSIDA SLLPMDSPAR IKVEEMFARE IRNIVAGEGM 600 DRLERHENFE TWRKLMEQGG FRSTRIGERE LMQNRMLLRM YSCDEDYSVK EQGRDNEAGV 660 GGVTLGWQDQ PLFTVSAWTP ADVAGSSSSF SQLG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE APAQFQACHF PMSTQRLDLP CSFSRKDSSR AQPIRPVTSL  60
SVEKPIESKT SSCSLKQSIR LPPLATTAPA SSAAGQTTFG EGRKDIKEEF WPRGKSLKRF  120
AEQGSVDESF INRAKRKRGI SDDRGETNEV VLEDEEERLS LGQLGAGNFW LQPGFNPHLP  180
FSLTCSGDEE EERRVCYVPG GEVISPPLPL SNNPWIDSVV TEITDLGEKG GETSRHVLPR  240
KEGSAAASSA SSGSQSQSLV PRINEGVPDY DVGNGSRNPH SHGGSEVVEV GEEDLINQEV  300
SEGFELLSLL TSCVEAIGSK SIHAINHFIA KLGDLASPKG TPISRVTAYY TEALALRVTR  360
LWPQMFHITP PREFERVDED SGSALRFLNQ VTPIPKFLHF TSNEVLMRAF EDKDRVHIID  420
FDIRQGLQWP SLFQSLASRT NPPSHVRITG IGESKQELNE TGDRLAGFAE ALNLPFEFHP  480
VVDRLEDVRL WMLHVKEHES VAVNCIFQLH KTLYDSSGGV LRDFLGLIRS TNPTVVVMAE  540
QEAEHNDPRL EARVCNSLKF YSAIFDSIDA SLLPMDSPAR IKVEEMFARE IRNIVAGEGM  600
DRLERHENFE TWRKLMEQGG FRSTRIGERE LMQNRMLLRM YSCDEDYSVK EQGRDNEAGV  660
GGVTLGWQDQ PLFTVSAWTP ADVAGSSSSF SQLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-72	302	680	15	380	Protein SCARECROW
5b3h_A	7e-72	302	680	14	379	Protein SCARECROW
5b3h_D	7e-72	302	680	14	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896272.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2P5BBU0	0.0	A0A2P5BBU0_TREOI; GRAS transcription factor
STRING	EOY24632	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein