PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26298.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 462aa    MW: 52563.3 Da    PI: 6.1495
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26298.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.41e-85824611373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +++l+++cA+ +s++dl++a++l++ ls ++sp+gd+m+Rl + + +AL ++++     + ++ p  +   ++ +   +++ ++++++P+++f+hltaNq
  PK26298.1  82 MRQLVTRCADLISHSDLTAAHRLISILSANSSPYGDSMERLLHQLSKALLHQIQI----IQNQNPIDHY--YDLEALHSSYLTLNQITPFIRFCHLTANQ 175
                57999************************************************98....4443333333..457777778888***************** PP

       GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledleleeL.. 194
                aIle +++   + +HiiDfdi++GlQWp+++qaL++R ++  +lRiT+ g     +   l++tg+rL +fA++lg++f+f+++    ++ + l +++L  
  PK26298.1 176 AILEVIDHTqhHSLHIIDFDIMHGLQWPPFMQALSER-HPMLRLRITATGT----DLSLLRRTGDRLLRFAQSLGLHFQFQPFllPRNHPHHLIINALis 270
                ******98866889**********************9.6788*********....9**************************954334667777888866 PP

       GRAS 195 .......rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                       r      +EalaVn+vl l+r++      ++e + +L+ +k+ l+P+vv+++e+ +++        +  ale+ysa+f+slea+lp++s+er+
  PK26298.1 271 sggtsssR--AkddDEALAVNCVLYLQRVV-----AKEEVEMFLNSIKGvLNPTVVTIAERCISR------YYLDGALEHYSAIFESLEATLPPNSRERV 357
                66655433..1558***************9.....3333567******857*********98887......456679*********************** PP

       GRAS 284 kvErellgreivnvvacega..err........erhe...tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                 vE+++lgrei++v  +  +  + +        e+h    + ++    ++++GF++++ls +a++qaklllr ++ s+gy+++  ++sl+l W++rpL+s
  PK26298.1 358 EVEQVWLGREIMEVMKMMRNgsSNNeneiniedEDHDhvvNNNNYDVVIGRCGFENIALSPFAVSQAKLLLRLHYpSEGYHLHILNNSLFLSWQNRPLFS 457
                *************9865432002220111111123321114678999***************************************************** PP

       GRAS 370 vSaW 373
                vS+W
  PK26298.1 458 VSSW 461
                **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.01856441IPR005202Transcription factor GRAS
PfamPF035143.6E-8382461IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGSFNSSSHH QYPQPQPNED NTSTTNTNTI TTTTTASSDL VVVHDDDIDE LGLGINNPLQ  60
PQPPQQQQQQ PQYPIINNPI QMRQLVTRCA DLISHSDLTA AHRLISILSA NSSPYGDSME  120
RLLHQLSKAL LHQIQIIQNQ NPIDHYYDLE ALHSSYLTLN QITPFIRFCH LTANQAILEV  180
IDHTQHHSLH IIDFDIMHGL QWPPFMQALS ERHPMLRLRI TATGTDLSLL RRTGDRLLRF  240
AQSLGLHFQF QPFLLPRNHP HHLIINALIS SGGTSSSRAK DDDEALAVNC VLYLQRVVAK  300
EEVEMFLNSI KGVLNPTVVT IAERCISRYY LDGALEHYSA IFESLEATLP PNSRERVEVE  360
QVWLGREIME VMKMMRNGSS NNENEINIED EDHDHVVNNN NYDVVIGRCG FENIALSPFA  420
VSQAKLLLRL HYPSEGYHLH ILNNSLFLSW QNRPLFSVSS WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-428846125378Protein SCARECROW
5b3h_A2e-428846124377Protein SCARECROW
5b3h_D2e-428846124377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089721.11e-138scarecrow-like protein 18
TrEMBLA0A2P5ETH01e-157A0A2P5ETH0_TREOI; GRAS transcription factor
STRINGXP_010089721.11e-137(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-88GRAS family protein