PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26145.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 353aa    MW: 38648.1 Da    PI: 7.6924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26145.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033237259123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  PK26145.1 237 HECSICGAEFNSGQALGGHMRRH 259
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.69E-7138161No hitNo description
PROSITE profilePS5015710.492139166IPR007087Zinc finger, C2H2
SMARTSM003550.28139161IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-10139163IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SuperFamilySSF576677.69E-7232259No hitNo description
PfamPF139126.7E-13236260IPR007087Zinc finger, C2H2
SMARTSM003550.011237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577237259IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MESQEELIVH NKDHDHDLTM MKQNMTMMMI KGKRTKRPRA PSSNLFTHMA SSSSSTGASG  60
GGSGSGGGGG FSLASPTTSS TELTETIIKT TEEEEDMANC LILLAQGGLH NDRLSSPENE  120
FQAAEKMAAC GSTNTTSIYQ CKTCNRCFQS FQALGGHRAS HKKPKTTANN NMNIINADHQ  180
VKENNNKQTL SFQVGVMDDH DHHQQLIING NSTSTALSLQ ISNSNNVKMN SKVPKVHECS  240
ICGAEFNSGQ ALGGHMRRHR TTPFNNNAQT TSFTSSTTTT ASHDHDHEKL KNNNTTTTMA  300
MVMKKKPRHV LELDLNLPAP DEDHRRETKF PFNAAAKEQV IVFSASPLVD CHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-39C2H2 family protein