PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK26077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 26669.3 Da PI: 7.6955 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.4 | 7.3e-25 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ PK26077.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 222 99*****************************8544444..48************************************************..8899999* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PK26077.1 223 LGIRRA 228 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-46 | 112 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-43 | 120 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-23 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.4E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRLSAVGFSP QPQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE 60 VDAHIPNYPS LPPQLICQLH NVTMHADIDT DEVYAQMTLQ PLSPEEQKEA YLPAELGAPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-114 | 13 | 239 | 43 | 270 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090447.1 | 1e-167 | auxin response factor 6 | ||||
Refseq | XP_027171592.1 | 1e-169 | auxin response factor 6-like | ||||
Swissprot | Q9ZTX8 | 1e-157 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A2P5E9Y5 | 1e-167 | A0A2P5E9Y5_TREOI; Auxin response factor | ||||
TrEMBL | B9T414 | 1e-167 | B9T414_RICCO; Auxin response factor | ||||
STRING | evm.model.supercontig_17.53 | 1e-170 | (Carica papaya) | ||||
STRING | XP_002532983.1 | 1e-168 | (Ricinus communis) | ||||
STRING | XP_010090447.1 | 1e-166 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13924 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 1e-162 | auxin response factor 6 |