PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25985.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 365aa    MW: 40943.6 Da    PI: 9.5584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25985.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-057393323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C++C+k F r  nL+ H r H
  PK25985.1 73 CEICNKGFQRDQNLQLHRRGH 93
               *******************88 PP
2zf-C2H213.60.0002148170123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  PK25985.1 148 WKCEKCSKKYAVQSDWKAHTKIC 170
                58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-77093No hitNo description
SMARTSM003550.117193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM0035593113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MISDQDIISV NNPSTTINRG FVQEPNLNPN PNPNNNTNPS AKKKRNLPGN PDPDAEVIAL  60
SPKSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSNKDVIRK KVYVCPEKTC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHTKIC GTREYKCDCG  180
TLFSRKDSFI THRAFCDALA EENARFGTTT TTTTLPTTNI PNFIINNNNN PPHQTVITAS  240
NRITHQLSPI FSPEFGSDTT CEIRSRLPVW LDPTANSTNV NPFMTTPIPN DHQMLLQTAA  300
ASNIFGQQHQ WMNMSSSSSL SRGLKEEEES RGNNNNSSTT TTTATIPNND NNSMMTSSSS  360
SLLNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-37144206365Zinc finger protein JACKDAW
5b3h_F3e-37144206365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197110KLRQRSNKDVIRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866596.11e-148protein indeterminate-domain 9-like
TrEMBLA0A2P5E4D01e-143A0A2P5E4D0_TREOI; TFIIH C1-like domain containing protein
STRINGGorai.006G120000.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-101C2H2-like zinc finger protein