PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25885.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 345aa    MW: 37766 Da    PI: 5.2424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25885.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.18.6e-2744138186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rWt+qe+l+Li+++r  e+++rr +         + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e +r++ s s +++ ++l+
  PK25885.1  44 RWTRQEILVLIQGKRVAESKVRRIRtagtafgsgQVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWELQRKDASDSFWAMRNDLR 138
                8*********************844445566666**********************************************999999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.444110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-544109IPR009057Homeodomain-like
PfamPF138372.9E-1244134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALELSLPTN PVDTEADGVT NGVEARPSST DGGDDGSRAP RLPRWTRQEI LVLIQGKRVA  60
ESKVRRIRTA GTAFGSGQVE PKWASVSSYC RMHGVNRGPV QCRKRWSNLA GDYKKIKEWE  120
LQRKDASDSF WAMRNDLRRE RKLPGFFDKE VYDILDAGSG SGIGQQTSLV VAPPPAEEVE  180
KDATAEEPEE NTVMFDSRRG VTAEDGMFSD FEQEESGRSS EKEAEATMAA AKEAPPAASI  240
GIPAVPISAG GAANEKLPTS NPEIGATSHE GKKRRRLAFE GDEETSLQNQ LIDVLERNGK  300
AVASHLDAQN THFQLDREQR KNHSDSLVAV LNKLADALVR ISEKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272276KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895940.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-106ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2P5F1X80.0A0A2P5F1X8_TREOI; Homeodomain-like
STRINGXP_010100033.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-106Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]