PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 455aa MW: 50323.4 Da PI: 7.1403 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1e-33 | 68 | 122 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl PK25809.1 68 KPRLKWTSDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 122 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.997 | 65 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 66 | 123 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-16 | 67 | 123 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 68 | 123 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-9 | 70 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-15 | 172 | 213 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MSSMYHHHHH HHLSGKNINM HVSSSNNNSS RNIPPERHLF LGNNGGGGGG SGGGSHGDAG 60 LVLSTDAKPR LKWTSDLHER FVEAVNQLGG ADKATPKTVM KLMGIPGLTL YHLKSHLQKY 120 RLSKNLHGQV SSPTKISTVG GGPVAERISE AMSGNHMNNL SINGPQTNNK GFHINETLQM 180 QIEVQRRLHE QLELRIEAQG KYLQAVLEKA QETLGRQNVG TVVGLEAAKV QLSELVSKVS 240 TQCLNSAFEA TPPPELASCP NPNPNPSPGR GRGDCSVDSC LTFEHGSQKD QEIAHGIVLR 300 AYNNNNNNNS ATTTTFFESK EGNNNTTTIT TPELLDQNNM FLKQERRLFS IERNGLSMSI 360 GGSNNNNHHH HHRDIRWDDT TRDQDRHKRF VKLDNNDEDD HDDDENNNEK VSRSSSIVPA 420 NFFATKVLDL NTHHNDQNDS SSNCKQFDLN GFSWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-20 | 68 | 124 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 68 | 124 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 68 | 124 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 68 | 124 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 67 | 124 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026934.1 | 1e-138 | myb-related protein 2 isoform X2 | ||||
TrEMBL | A0A2P5AJ57 | 1e-162 | A0A2P5AJ57_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010104961.1 | 1e-135 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 2e-90 | G2-like family protein |