PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25720.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 460aa    MW: 51127.1 Da    PI: 8.3041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25720.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-0687109123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C++C++ F r  nL+ H r+H
  PK25720.1  87 YVCEICNQGFQRDQNLQMHRRRH 109
                9*********************9 PP
2zf-C2H215.45.4e-05164186123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +C+k +  +s++k H++t+
  PK25720.1 164 WVCDKCSKGYAVQSDYKAHLKTC 186
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-586109No hitNo description
Gene3DG3DSA:3.30.160.601.9E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9787109IPR007087Zinc finger, C2H2
SMARTSM003550.005287109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355210128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4155185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-5159184No hitNo description
SMARTSM0035565164191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MLENNNNTAS SSAAVAADPS SSSDHIHHHH HHHQTHYGFP HNNSSENGVV IINNTNTKRK  60
RRPAGTPDPD AEVVSLSPKT LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET  120
QEVKKRVFVC PEPSCLHHDP CHALGDLVGI KKHFRRKHSN HKQWVCDKCS KGYAVQSDYK  180
AHLKTCGTRG HSCDCGRVFS RVESFIEHQD SCTVRQVRPE LQALQPASAT AATTAAGCSS  240
RTASSTSPSS DANFSNSKGN HRLLMINLPK PNELLPNMFL NNNNIKNQQS LLELQLLPST  300
NSSEAVGGVS NQNSSEENYA STHLKLSIGS NNNNLEAGGG ENNQGAEVCR MRNLANDEMK  360
LAMAEKTYAE EARREAKRLI EMAEMEFTNA KRIRQQAQAE LEKAQLLREQ ATKKISSTIL  420
QITCQACKQH FQTTPLGPSD ETTSLAMSYM SSATTEGEGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17162212555Zinc finger protein JACKDAW
5b3h_F1e-17162212555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027411.10.0protein SHOOT GRAVITROPISM 5 isoform X2
SwissprotF4IPE31e-165IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2P5EDZ80.0A0A2P5EDZ8_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010105532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-116C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]