PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 30557.3 Da PI: 9.1131 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.3 | 6e-18 | 129 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k +++s+v+ +l lp +f+++h + +++ ++tl de+g ++ k+ + k++ l++GW++F+ +++L +gD +vF+l+++++f +v ++r+ PK25650.1 129 FVKPMLQSHVTGGFWLGLPVQFCKNHL-P-HTDEMITLIDEEGGEFPTKYLVLKTG----LSGGWRGFAIDHQLVDGDALVFHLVKSTQF--KVYIIRA 219 89*********************8884.4.34569***************888887....************************998888..9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 120 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-26 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.12E-27 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 1.5E-15 | 129 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 129 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MVESKLGYEE SRKQRLEENK KRMEDLNLTK LAQALKTPTP KSTPVKQAKP RARESSSAPL 60 RRSNRVADKS PPNYKEDPIE PLEWPRSYYR SYHRKDLLNR VYASDEVRKY AIYRAEVLQS 120 ELDSNFPSFV KPMLQSHVTG GFWLGLPVQF CKNHLPHTDE MITLIDEEGG EFPTKYLVLK 180 TGLSGGWRGF AIDHQLVDGD ALVFHLVKST QFKVYIIRAN QTEDQDLVNE DEAKEENNKD 240 LDDVLPASGS GSSRKSKKIR TKGQDVX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028935.1 | 1e-118 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 3e-83 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A2P5CQT2 | 1e-135 | A0A2P5CQT2_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_009612757.1 | 1e-111 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 9e-84 | B3 family protein |
Publications ? help Back to Top | |||
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