PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 267aa    MW: 30557.3 Da    PI: 9.1131
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25650.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.36e-18129219199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k +++s+v+   +l lp +f+++h  + +++ ++tl de+g ++  k+ + k++    l++GW++F+ +++L +gD +vF+l+++++f  +v ++r+
  PK25650.1 129 FVKPMLQSHVTGGFWLGLPVQFCKNHL-P-HTDEMITLIDEEGGEFPTKYLVLKTG----LSGGWRGFAIDHQLVDGDALVFHLVKSTQF--KVYIIRA 219
                89*********************8884.4.34569***************888887....************************998888..9998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21120220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-26122220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-27127218No hitNo description
PfamPF023621.5E-15129219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026129220IPR003340B3 DNA binding domain
SMARTSM010191.5E-23129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVESKLGYEE SRKQRLEENK KRMEDLNLTK LAQALKTPTP KSTPVKQAKP RARESSSAPL  60
RRSNRVADKS PPNYKEDPIE PLEWPRSYYR SYHRKDLLNR VYASDEVRKY AIYRAEVLQS  120
ELDSNFPSFV KPMLQSHVTG GFWLGLPVQF CKNHLPHTDE MITLIDEEGG EFPTKYLVLK  180
TGLSGGWRGF AIDHQLVDGD ALVFHLVKST QFKVYIIRAN QTEDQDLVNE DEAKEENNKD  240
LDDVLPASGS GSSRKSKKIR TKGQDVX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028935.11e-118B3 domain-containing protein At3g19184
SwissprotQ1G3M33e-83Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2P5CQT21e-135A0A2P5CQT2_TREOI; B3 DNA binding domain containing protein
STRINGXP_009612757.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-84B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]