PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 546aa MW: 62018.7 Da PI: 4.585 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 395 | 436 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++av+q G++ ++ I + ++ +Rt+kq+k+++ k PK25622.1 395 RWSKNDTELFYEAVQQIGTD-FSIIQQLFP-NRTRKQLKLKFKK 436 9*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.6E-28 | 386 | 468 | No hit | No description |
SMART | SM00717 | 7.0E-8 | 392 | 440 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-7 | 393 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.95E-10 | 394 | 442 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.36E-6 | 395 | 436 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
XDIFSVLECL DDFITETTCD LGSETSKPQS KVHTDENLSF PAHPSFDSSS FTICDVAPSQ 60 ICSDYHSTQD PVSFSNTTVS DEPEEAQSND GRSKTMVAED LFDFEVYDGN VASGQCVGKF 120 QPNPKLGKGK KKPSTREPQA EVSSGVPYVH NVPQVNSVLE FPSEGDAEPT NFAKTTYSEV 180 VEDDPVVEEV GGKNIIGESS AEPNGLRRSQ RSSAAMQEIE EDLGQLLEEE DNDEEYRVDD 240 KSKKKKAIRK LEEPASGKEK PVRKRKSSKQ ASEEKIREPP KKFSHSTHRK KRIVDQALLD 300 MPEDEIDPQR LPIKDLILLA EHRERMAIKD AAKLKTPQTN QSADDSFRQG VSHNEEMFHS 360 EQGQNSDDEQ PTYSAQPSSS YVNYHSFMDK TPSTRWSKND TELFYEAVQQ IGTDFSIIQQ 420 LFPNRTRKQL KLKFKKEERQ HPLRLSDSLN NRSKDHSHFE SVIKILQELA AQAKQEAIGN 480 ESNWHPGEEE MEEPTRNTNE EHTKSELDVV VKDQEQKMEV TDLQKSPLKY DEGDDDPDRW 540 NNYDDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 2e-12 | 379 | 482 | 65 | 169 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 2e-12 | 379 | 482 | 65 | 169 | Transcription factor TFIIIB component B'' homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 265 | KKKAIRKLEEPASGKEKPVRKRK |
2 | 259 | 265 | KPVRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027250.1 | 1e-175 | uncharacterized protein LOC21392104 | ||||
TrEMBL | A0A2P5DVP6 | 0.0 | A0A2P5DVP6_TREOI; TFIIIB transcription factor | ||||
STRING | XP_010105352.1 | 1e-158 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-43 | MYB_related family protein |