PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK25565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 28517.7 Da PI: 7.1803 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H PK25565.1 103 FSCNYCRRKFYSSQALGGHQNAH 125 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-6 | 101 | 131 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLTPDINLEC ENDSDVSSQV ASNAAFHDSS PNVSKDSTAA SSCLTNIAKL QEDSRPVSLD 60 LSLQFTSNNT STDVELIKGG RGESSSNDVA TTHTSVTTIP RVFSCNYCRR KFYSSQALGG 120 HQNAHKRERT MAKRAMRMGI FSGRYTSLAS LPLHGSAFRS LGVEAHSAVH QRVMPSSERI 180 PEIARGGAKF QQGYYGMPMF MEDDEVDLFW PGSFRQVDEG VGSSLEVQFG QNSNNNIATK 240 LPRARTPPRT DSTSPDLTLK L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105555.1 | 1e-130 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 2e-46 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2P5D239 | 1e-138 | A0A2P5D239_PARAD; Yin/yang transcription factor | ||||
STRING | XP_010105555.1 | 1e-130 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-49 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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